Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10 172 1e-37 seq8 161 2e-34 seq2 134 3e-26 >seq10 Length=7496699 Score = 172 bits (190), Expect = 1e-37 Identities = 317/465 (68%), Gaps = 0/465 (0%) Strand=Plus/Plus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| || ||||| |||||| |||| |||||||| || ||||| | ||| | || || Sbjct 1111206 CCACATGGCCTCGACGTAGTCCTGCGCGTGGCCCCAGTCACGCTTCGAGTCGAGATTGCC 1111265 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 || || ||| | ||| | |||||| | ||| | ||| || || || || Sbjct 1111266 CAGCTCCAAGCACTCCTGTTGACCGAGCGAAATTTTTGCCACCGAGCGCGTTATCTTGCG 1111325 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 ||| || || | || || || | || ||| |||||||| |||||||| ||||| || Sbjct 1111326 GGTGACAAAATTTTCTCCCCGGCGGGGAGACTCATGGTTGAACAGGATGCCATTGCAGGC 1111385 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 |||||| | || || || ||||| || | || ||||||| | ||| |||||| Sbjct 1111386 AAACATGTCGTACGCTTCGCGGTAATTTATCACGATCCAGTAGCCGTACAGTTTTGCACA 1111445 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 ||||||||||| || |||| |||||| ||| | || || || |||| || || Sbjct 1111446 GGCGTACGGAGAGCGCGGATAGAAGGGTGTCTTTTCATTCTGTGGCGTTTCCACCACCTT 1111505 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 ||| | |||||||| || || || || ||||| | || || || || | | Sbjct 1111506 GCCGTAAAGCTCGGAAGTGGACGCCTGATAGAATCGAACAGCCTTCTCCAGCCCCACGGT 1111565 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || ||||| | |||||| ||||||| | ||||| || || ||||| || Sbjct 1111566 ACGGATGGCGTCGAGGAGACGAAGCGTTCCCACTGCGTCCACTTCGGCCGTATATTCGCT 1111625 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATA 268722 | ||||| || | | ||||||||||||||| ||| ||| || Sbjct 1111626 TAAATCGAAGGAGATTTTCACATGGCTCTGGGCGGCCAAGTTGTA 1111670 >seq8 Length=9380469 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| || || || ||||| || || ||||| || ||||| Sbjct 4936199 CCACCACGCAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 4936140 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| |||||||| || || | || ||||| || ||| Sbjct 4936139 AGCGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGA 4936080 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 4936079 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4936020 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 4936019 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4935973 >seq2 Length=16623535 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 ||||| || ||||| || | |||||||| || |||||||| || |||||||| || ||| Sbjct 2043755 TTTCCGCCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2043696 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | || || || | |||||| || ||||| || | | || || || || Sbjct 2043695 GACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGG 2043636 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| || |||||||| || ||||| ||||||||| |||||||||||| | | || Sbjct 2043635 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGACGGCTCG 2043576 Query 68412 ACTTCCAAGGTGAT 68425 ||||||| ||||| Sbjct 2043575 ACTTCCAGCGTGAT 2043562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921606605696120