Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq11 100 7e-18 >seq11 Length=7594930 Score = 100 bits (110), Expect = 7e-18 Identities = 211/312 (68%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 3198 CTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTAT 3257 ||||||| ||| |||||||||||||| ||| ||||| | ||||||| | ||| | Sbjct 2806202 CTGCGAGGCGCTGAACTTTGTCAACGTGCTCGGCCAGATCTACTTCATGGACTTCTTCCT 2806143 Query 3258 AGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCC 3315 | || || || | | |||||| | | | || ||||| | || | ||||| Sbjct 2806142 CGACGGCGAGTTCTCGACGTACGGCAGCGACGTGGTGCGCTTCACCGAGATGGAGCCGGA 2806083 Query 3316 CATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTT 3375 || | | ||| ||| ||| ||| ||||| || | |||| || || || Sbjct 2806082 G----GAGCGCGGCGA-CCCGATGGCGCGCGTCTTCCCGAAGGTCACCAAGTGCACCTTC 2806028 Query 3376 CACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAG 3435 ||||| |||||| | || || | || | || | ||| || || ||| | || ||| | Sbjct 2806027 CACAAGTACGGTGCGTCCGGTAGCGTGCAGAAGTTCGACGGCCTGTGCGTGCTGCCGCTG 2805968 Query 3436 AACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATC 3495 ||| | |||||||||||||||||| | ||||| |||||||||||| | |||| ||||| Sbjct 2805967 AACATCGTCAACGAGAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCCTGCTCACCATC 2805908 Query 3496 ATCAGCGGTATC 3507 | | ||| ||| Sbjct 2805907 CTGACCGGCATC 2805896 Score = 80.6 bits (88), Expect = 7e-12 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 2723 TCTTCCGGTTGCATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGA 2782 |||||||| |||| ||| || ||| ||||||||||| |||||||| || ||||||| | Sbjct 2806677 TCTTCCGGCTGCACTACAAGGCCACGGTGATCATCCTGATCGCGTTCTCGCTGCTGGTCA 2806618 Query 2783 CTTCGCGGCAGTACTTCGG 2801 | ||||| |||||| |||| Sbjct 2806617 CCTCGCGCCAGTACATCGG 2806599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479812858500