Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq19 470 3e-127 seq10 230 4e-55 >seq19 Length=3534686 Score = 470 bits (520), Expect = 3e-127 Identities = 1109/1657 (67%), Gaps = 52/1657 (3%) Strand=Plus/Minus Query 243743 AACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCC 243801 ||||||| || || | || || | |||||| | ||||||||||||||| ||||| || || Sbjct 2154478 AACTGGATCGCGTTC-ACTGCCGGCTTGGTGCGCAGGTAGTACATGCCCGTCTTCAGGCC 2154420 Query 243802 ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTC 243861 | |||| ||| || || || | ||||||||| | | | | || || ||| | Sbjct 2154419 CATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTT----ACCATAA--TTCGGCTCGGC 2154366 Query 243862 CTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGC 243921 | || ||| | |||| ||||| |||||| | ||| | | | || || || || Sbjct 2154365 CACGT---GAATG---TTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGGCCGC 2154312 Query 243922 CATGGTGATG-AGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 ||| |||| | || ||| || || || | |||||||||| | | || || Sbjct 2154311 CATTTTGATACACGTT-TTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGATGT 2154253 Query 243981 GCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCA 244040 ||| || | | ||||| ||||| | || || ||||| ||| || | | | || Sbjct 2154252 GCTGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTTTTTCA 2154193 Query 244041 TGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCT 244100 | | ||||| ||||||||| || | ||| ||| | || || || || |||| Sbjct 2154192 TTTCATCGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAGCAAATGATGATTGACGACCT 2154133 Query 244101 GAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCT 244160 | ||||| ||||||||||| || || | ||||| ||| || |||||||| || Sbjct 2154132 GGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACGACT 2154073 Query 244161 CCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGT 244220 | ||||||||| |||||||| ||| || |||||||| || | || ||| || || Sbjct 2154072 CGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAGCGAGT 2154013 Query 244221 TCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGA 244280 | | ||||| ||| | || | ||| | ||||| ||||| || || | Sbjct 2154012 TGCGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACA-GCTCG-GT 2153955 Query 244281 GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGC 244340 || || ||| ||||||||| ||||||||| |||||||||||| || |||| Sbjct 2153954 GGGGGTCTTGTT-------CCACATGTCGTACTGCAGCATCCCCTTGCTGACCGGACTGC 2153902 Query 244341 CCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGG 244400 ||||||| ||| ||| | || ||||| |||||||| ||| || | || | ||| Sbjct 2153901 CCTCGTACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACAACTGGCCTCCAAAGCGC 2153842 Query 244401 CGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGG 244460 ||||||||||||| |||||||| | ||||| | | |||| | | | | | Sbjct 2153841 CGTAGTAGATGGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCCTCTTCACTCTCGTACG 2153782 Query 244461 GGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGT 244520 || || ||||| ||||| | ||||||| |||||||||||||| ||||| || |||| Sbjct 2153781 GGTAGCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGT 2153722 Query 244521 GTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGT 244580 | ||| ||||||||||| | ||||| ||||| ||||| |||| |||||| | |||| Sbjct 2153721 GGCGCATGTTGGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTAATGTCGATGATTTTGT 2153662 Query 244581 TGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGG 244640 | |||||||| |||| | | |||| || ||| | ||| |||||| || | Sbjct 2153661 TCAGGTTGCGCGTGACAGTCTTGGCGACTTCCTTCAGTTTCGCAAAATCGTACGTGTGG- 2153603 Query 244641 GATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGA 244700 ||| || | |||| ||| ||| || |||| ||||| ||||||| Sbjct 2153602 --TCC--------GG----CTTCACGAACATGTTCAGCGCGATTGATGCCAGATTGCAGA 2153557 Query 244701 CGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGA 244760 | || | || ||| | | ||||| ||| || || ||||| ||||| |||||||| Sbjct 2153556 CCGCTATTTCATCCTTGGACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGA 2153497 Query 244761 TGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGG 244820 | ||||||| || ||| || ||| |||| ||||| || |||||||| |||||| | | Sbjct 2153496 TTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATCCTTGTACAGCATGTACG 2153437 Query 244821 GCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCG 244880 | | || ||||||| ||| | ||| || | ||| || ||| |||||||||| Sbjct 2153436 GGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCACAGATCCTGAGCCTTGACCT 2153377 Query 244881 TCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCC 244940 | | | | |||||| |||||||| ||||| || || ||||| |||| Sbjct 2153376 GACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTCTCCCC 2153317 Query 244941 A-GACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC-TCGCCGCCGTC 244998 | || || | || ||||| || ||||||||| | |||||| || | || | Sbjct 2153316 ACGAATCCGAC-AGTCCGGGACAATCGTGCGGGCACATCAAGCTCCACATCTCGTTCG-C 2153259 Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058 || ||| | ||||||||| || || || | ||||||||| | ||| | ||| | | | Sbjct 2153258 CTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGCGCG 2153199 Query 245059 CTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCA 245118 ||| ||| ||| ||||||||| |||| || | ||| || || || ||| ||||||| Sbjct 2153198 GACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCGAACACATCGCCGTGCCA 2153139 Query 245119 GGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCT 245178 ||||| | ||||| |||| || ||||| ||||||||||| |||||||| || | Sbjct 2153138 CGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATAGCG 2153079 Query 245179 CTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCC 245238 | || |||| ||| |||||| | ||||| | ||||| || ||||| ||||| Sbjct 2153078 CGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGTGCC 2153019 Query 245239 CTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGG 245294 |||||| | ||||| | | || ||| | ||||||| ||| | || |||| Sbjct 2153018 TGCGATGTACGTTCCCTTCGCAC---GGATGCAG-TGGACATTCAAGCCAATGCCTCCGG 2152963 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 | ||| || || || ||||| ||| | ||||| |||||||| |||||||| Sbjct 2152962 CCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGCCCTCGATGCTGTCGT 2152903 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 | ||| | |||||||||||||| || ||||| || Sbjct 2152902 CCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGG 2152866 >seq10 Length=7496699 Score = 230 bits (254), Expect = 4e-55 Identities = 307/418 (73%), Gaps = 13/418 (3%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| || || |||| ||| | ||||||||||| ||||||||||| ||| Sbjct 495769 CTATTCAATGCCATCGAAACACTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAAC 495710 Query 42669 TGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| ||| | || | |||| || |||||| || |||| || ||| ||||||||| Sbjct 495709 TGGATCTCGAG-CAAGAAGGCCAACTTT-GGCGAGCGGGTGGTTGCGTTTGCCGCCGTCG 495652 Query 42727 AGGGCATCTTCTTCT-CGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCG 42785 ||||||||||||| |||| || |||||| |||| |||||||| ||| || || | Sbjct 495651 AGGGCATCTTCTTTAGCGGGAGC-TTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTG 495593 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| || | |||||||||||||| || || | |||||||| ||||| | ||| Sbjct 495592 ATGCCGGGTTTGACCTTCTCGAACGAGCTGATTTCGCGCGACGAGGGCCTGCACTGCGAC 495533 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT--CC 42903 |||||||| || ||||| | |||| ||| ||||| || || || || || Sbjct 495532 TTTGCCTGTCTGATGTTC---AAGTACCTGGTGCAGAAGCCGACGCGCGAACGTGTGACC 495476 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 | ||||||| || || ||| ||||||| |||||||||||||| || |||| || | Sbjct 495475 AG--CATCATCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTCACGAAGGCGCTCCCGG 495418 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | || |||| |||||| || || |||| |||||||| ||| ||||||||| Sbjct 495417 TCGATATGCTCGGTATGAACTGTGATCTGATGTCGCAGTACATCGAGTTCGTCGCCGA 495360 Score = 107 bits (118), Expect = 4e-18 Identities = 178/255 (70%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT--CT 42392 |||||||| |||||| | |||||| | ||||||| | | |||||| | ||| | Sbjct 496126 CTGGACCGTGGAGGAGGTCGACCTGTCGAAGGACATGAAAGATTGGGAGGCGCTGAAGCC 496067 Query 42393 GAG--AACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 ||| | || | |||| || || | || || || |||||||| || ||||||| Sbjct 496066 GAGTGAGCGTCA----TTTCATCTCGCACGTGCTCGCATTTTTCGCCGCGTCGGACGGCA 496011 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || ||||| |||| | |||||| | ||||||||| || ||||||| Sbjct 496010 TCGTTAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTAACCGAAGCGCGCT 495951 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 |||||||||| |||||||| || || || ||||| ||| ||| |||| | ||| Sbjct 495950 GCTTCTACGGATTCCAGATCGCGATGGAAAACGTCCACAGCGAGATGTATTCGCTCCTGA 495891 Query 42571 TCAACACGTACATCC 42585 || |||||||||||| Sbjct 495890 TCGACACGTACATCC 495876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944323016386960