Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 4e-15 seq7 91.5 2e-13 seq12 89.7 6e-13 seq2 89.7 6e-13 seq4 87.8 2e-12 >seq8 Length=9380469 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||| | || |||||| ||||| ||||| || | ||| || ||| | Sbjct 4936187 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCA 4936128 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||| | || | || ||||||| Sbjct 4936127 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTG 4936068 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | || | | ||| || | || || || | || ||| Sbjct 4936067 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 4936008 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || ||||| || || || || ||||| ||||| || Sbjct 4936007 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4935970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2080027 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 2080086 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 2080087 ATACTATCGAGGAT 2080100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1911781 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1911722 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1911721 ATACTATCGAGGA 1911709 >seq7 Length=10083987 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||| ||||| ||||| || | | |||||||||| ||||||||||||||||||||| Sbjct 4556944 TATAAAAAACCATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 4557003 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 4557004 ATACTGACCACTATACTATCGAGGA 4557028 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 56989 ACGTTTATGAAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACA 57046 || |||| ||||| || ||||| || | | |||||||||| |||||||||||||||| Sbjct 4673703 ACATTTAAAAAAAACTTCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACA 4673644 Query 57047 GGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||| ||||| |||||||||||| |||||| Sbjct 4673643 GGCGGGGATACTGACCACTATACTATCGAGGA 4673612 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 3839581 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 3839522 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 3839521 TATACTATCGAGGA 3839508 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 8115805 ATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 8115746 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 8115745 CACTATACTATCGAGGA 8115729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4556619 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4556678 Query 57066 ATACTACCGAGGATTGAATAT 57086 |||||| |||||| | || || Sbjct 4556679 ATACTATCGAGGACTTAACAT 4556699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4557288 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4557229 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4557228 ATACTATCGAGGA 4557216 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 486188 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 486247 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 486248 CTATACTATCGAGGA 486262 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 492899 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 492958 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 492959 CTATACTATCGAGGA 492973 >seq12 Length=8157176 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 |||| |||||| ||||| || | | |||||||||| |||||||||||||||||||| Sbjct 3866722 TTTAAAAAAAATCAGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 3866781 Query 57051 GACATACTCACCACTATACTACCGAGGATTG 57081 | ||||| |||||||||||| |||||| || Sbjct 3866782 GGGATACTTACCACTATACTATCGAGGACTG 3866812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 861024 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 860965 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 860964 TACTATCGAGGAT 860952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3866074 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3866133 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 3866134 TACTATCGAGGAT 3866146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 3867245 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 3867304 Query 57064 CTATACTACCGAGGATTG 57081 |||||||| |||||| || Sbjct 3867305 CTATACTATCGAGGACTG 3867322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 3867760 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 3867819 Query 57064 CTATACTACCGAGGAT 57079 |||||||| ||||||| Sbjct 3867820 CTATACTATCGAGGAT 3867835 >seq2 Length=16623535 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||| || |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 6877408 AAAATTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 6877467 Query 57060 ACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 6877468 ACCACTATACTATCGAGGA 6877486 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 8266853 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 8266794 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 8266793 CTATACTATCGAGGA 8266779 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || ||||| || | |||||| || |||| || Sbjct 2043734 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 2043675 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||||||||||||||| || | |||||||| || | || | | |||||||||| | Sbjct 2043674 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 2043615 Query 42120 ATTTT 42124 || || Sbjct 2043614 ATCTT 2043610 >seq4 Length=12071184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9633816 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 9633757 Query 57067 TACTACCGAGGATTGAATATATAA 57090 ||||| |||||| |||||||| Sbjct 9633756 TACTATCGAGGA---CATATATAA 9633736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543203490690640