Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq19 132 5e-26 seq8 113 5e-20 seq1 82.4 8e-11 >seq19 Length=3534686 Score = 132 bits (146), Expect = 5e-26 Identities = 552/857 (64%), Gaps = 33/857 (4%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCA--GAACTACTGTATTGCACAATTTCTGCGC 154644 || |||| ||||| || || ||||| || | || | ||| | || ||||| | || Sbjct 2153572 GATGCCAGATTGCAGACCGCTATTTCATCCTTGGACGA--GTACTCGACGATTTCCGTGC 2153515 Query 154645 ACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGT 154704 ||| || ||| || ||||||| ||| | || || ||| ||||| || | Sbjct 2153514 ACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCAT 2153455 Query 154705 CTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACA 154764 | ||||||| ||||||||| |||||| || || || | ||| || || | | || || Sbjct 2153454 CCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGG--CAAACCA 2153397 Query 154765 GACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAG 154822 | || | |||| || |||| |||| || || |||| || | ||| || Sbjct 2153396 CAGATCCTGAGCCTTGACCTGACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGAG 2153337 Query 154823 TTTTTCAAACTCTAAACTGTACACG--TCCGACAAACCGGGACAGCGGTCGGGACACATC 154880 ||||||||||| || |||| ||||||| |||||||| || || |||||| Sbjct 2153336 CTTTTCAAACTCCT--CTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATC 2153279 Query 154881 AATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCG 154940 || |||||| ||||| | ||||| | ||| |||| |||||||||||| | ||| Sbjct 2153278 AAGCTCCACATCTCGTTCGCCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCG 2153219 Query 154941 TACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAA 155000 || |||| || ||||| || || ||| |||| ||| | || | ||| Sbjct 2153218 TAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAAC 2153159 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCG---TTTT 155057 || | | ||| ||||||||||||| | || | || | ||| || ||| || Sbjct 2153158 TCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTG 2153099 Query 155058 CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCG 155117 || || || || || | ||| | || ||||| ||||||| || || ||| ||| Sbjct 2153098 CCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCG 2153039 Query 155118 CTGGCCGTGCCGTTGGTGCC----ACGTATCGCGCTGCCGCGAGCACGCGCTTTA-TGAA 155172 ||| | ||||| ||||| | ||| || | || ||||| | | | || | Sbjct 2153038 TTGGAAATTCCGTTCGTGCCTGCGATGTA-CG---TTCCCTTCGCACG-GATGCAGTGGA 2152984 Query 155173 CATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGT 155232 |||| | ||| | |||||| | | || || || |||| || | | ||| || |||| Sbjct 2152983 CATTCAAGCCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGT 2152924 Query 155233 ACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATT---GAG 155289 | || || | ||||||||| || || ||||| || || || ||||| | | || Sbjct 2152923 AAATGCCCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGAC 2152864 Query 155290 GTTGAG-GGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCG 155348 |||| | ||| |||||||| |||||||| || || ||||| | | | Sbjct 2152863 GTTGTGTCGCA----GCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAG 2152808 Query 155349 GTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACG 155408 || || || || || ||||| || || || || ||||| || ||||| || ||| Sbjct 2152807 AGTAGATTATAGGTCTCTATGGCCGCATCGATATCCTCGCCGTGAATGCCGATGGCTACG 2152748 Query 155409 CGCATCAGCATGTGTTG 155425 ||||||||||| || || Sbjct 2152747 CGCATCAGCATATGCTG 2152731 >seq8 Length=9380469 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | ||||| || || ||||||||||| || | | |||||| | || Sbjct 4936184 AGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCATCC 4936125 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || ||||||||||| || ||||| || || || || Sbjct 4936124 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 4936065 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| || || || || | || | |||| Sbjct 4936064 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTC 4936005 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || || | ||||| ||||| || ||||| || Sbjct 4936004 TTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4935970 >seq1 Length=20238125 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || | ||| || || | ||| || || || ||||| ||||| || | Sbjct 19807252 ACCACCACGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGA 19807193 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||| |||||||| | || || || || || || ||||| Sbjct 19807192 TAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGG 19807133 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCA 64394 |||||| || || ||||| || || ||| ||| ||| | || | | |||| || | Sbjct 19807132 AATTCCCTCCTTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGC-TCGA 19807074 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | |||||| || || | ||||| || ||||| ||||| || Sbjct 19807073 CCTCAAGCGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCATCTT 19807022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636237337240