Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 >seq4 Length=12071184 Score = 100 bits (110), Expect = 2e-16 Identities = 221/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 |||||||| || ||||| | || || || ||| | ||| ||| | |||||||| Sbjct 9602962 GCCGGGTTTGGGGTGACCGGTGGGGTGCACCGGCTCTGGTGCCATCGTTCGTACAAGGCG 9603021 Query 108400 A--CCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCA 108457 | | ||||| | | | ||||| | |||| |||| | || || |||||||| | Sbjct 9603022 AAGCTGCCCC--TGCGCATCATCCTGATGTGCTGCTACTCGATCGCCGGCCAGAACACAA 9603079 Query 108458 TCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGAC 108516 || | ||||| | |||||| | | |||||||||||||| || || ||||| || Sbjct 9603080 TCTACGACTGGGTCCGGGATCACCGCATCCACCACAAGTACTCGGAAACGGACGG-TGAT 9603138 Query 108517 CCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAG 108576 ||||||||||| ||| |||| ||| || | ||||||| || ||||| ||| | |||| Sbjct 9603139 CCACACAACGCGAACCGGGGCTTCCTGTACGCGCACGTCGGCTGGCTGATGCTCCGCAAG 9603198 Query 108577 GACCCCGACGTG-ATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCC 108635 |||| || ||| ||| | || || || |||||| | ||||| | |||||| Sbjct 9603199 CACCCGGA-GTGCATCAAGAAGGGCCGCCTCATCGACATGTCCGACATCGTCAGCGATCC 9603257 Query 108636 GGTGGTAGTGTGGCACACCAAGTA 108659 ||| || || ||| |||||| Sbjct 9603258 GGTCGTGCAGTTCCACCACAAGTA 9603281 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 108810 GGCGCACATGTACGGCGACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATT 108869 ||||||||||| ||| |||| |||| |||||||| |||| ||| || ||| | Sbjct 9582119 GGCGCACATGTTTGGCAACCGGCCGTACGACAAGAGCATTAGCCCGGTCGAGAACCTTTC 9582178 Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929 ||||||| |||||| ||||| || ||||||||||| ||||| |||||||| | || Sbjct 9582179 GGTGGCGATCGCGGCTCTGGGCGAAGGCTGGCACAACTATCACCATGTGTTCCCGTGGGA 9582238 Query 108930 CTACAAGGCCGCCGAGTTGGG 108950 |||||| || |||| |||| Sbjct 9582239 CTACAAAACCAGCGAGCTGGG 9582259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929 |||||| |||| || ||||||| |||||||||||||| |||||||||||||| | || Sbjct 9628218 GGTGGCATCGTTCGCGTTCGGCGAAGGATGGCACAACTATCACCACGTGTTCCCGTGGGA 9628277 Query 108930 CTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||||| | |||||| |||| ||| || Sbjct 9628278 CTACAAGACGGCCGAGCTGGGCAACTAC 9628305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACA-CGACGGCCGACCCACACAA 108524 ||||||| ||||||| | | || ||||||||||| || | |||| |||||||| ||||| Sbjct 9608195 TGGGTGCGCGATCACCGCATCCATCACAAGTACTCGGAGACCGAC-GCCGACCCGCACAA 9608253 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 | ||||| |||| |||| | | ||||||| || ||||| || | |||| |||| || Sbjct 9608254 CTCCAACCGGGGCTTCTTCTACGCGCACGTCGGCTGGCTGCTGCTCCGCAAGCACCCGGA 9608313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381766420934424