Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq19 453 1e-122 seq10 125 7e-24 seq8 96.9 3e-15 seq1 89.7 5e-13 seq2 84.2 2e-11 >seq19 Length=3534686 Score = 453 bits (502), Expect = 1e-122 Identities = 1236/1870 (66%), Gaps = 42/1870 (2%) Strand=Plus/Minus Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744 || || |||||||| | || | | || ||||| ||||||| || ||||||||||| Sbjct 2154487 TCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTACATGCCCGTC 2154428 Query 152745 TTGAGGCCGCAGCG-CCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTG 152803 || ||||| || | ||| ||| |||||||| |||| | | | || |||| | Sbjct 2154427 TTCAGGCC-CATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTTACCATAATTCGGCTC 2154369 Query 152804 CGCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCAT 152863 |||||| | || ||||| || ||| || ||||| || ||| ||||||||||| Sbjct 2154368 GGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGGCCGCCAT 2154309 Query 152864 CTCAATCATGCGTTTTG-CCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTAT 152922 | || | |||||| || || ||||| | || |||||||| | | | | Sbjct 2154308 TTTGAT-ACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGATGTGCT 2154250 Query 152923 CCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTT 152982 ||| || | || || ||||| || || || ||||| || | || |||| |||| Sbjct 2154249 GCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTTTTTCATTT 2154190 Query 152983 CGGGCGTGT-ACACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGA 153041 | ||| ||| | | | | ||||| | | ||| | || ||||| || || Sbjct 2154189 CAT-CGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAGCAAATGATGATTGACGACCTGG 2154131 Query 153042 AACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCG 153101 |||||||||| || ||| || | || || || |||| | || || || || ||| Sbjct 2154130 AACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACGACTCG 2154071 Query 153102 TTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTC 153161 || ||||| | || || || |||| ||||||||||| |||| || | || || Sbjct 2154070 TTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAGCGAGTTG 2154011 Query 153162 CGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGT 153221 || | ||| ||| ||| | ||||||| | | ||| | ||||||| | | || Sbjct 2154010 CGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACAGCTCGGTGGGG 2153951 Query 153222 GTCGCGTTCCACATGTCGTACTGTAACA-CTCCTCGACTGGCGGGACTGCCGGCAAACGT 153280 ||| |||||||||||||||||| | || | ||| | ||| | |||||||| | |||| Sbjct 2153950 GTCTTGTTCCACATGTCGTACTGCAGCATCCCCTTG-CTGACCGGACTGCCCTCGTACGT 2153892 Query 153281 ACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATAT 153340 ||| |||| ||||| |||||| || || || ||||| | ||||| ||||| || Sbjct 2153891 CTCGTACGTGCCATCGCGGGCGGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGAT 2153832 Query 153341 GGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAG 153400 ||||||| |||||||| || || ||| ||||| ||||||||||| ||||| Sbjct 2153831 GGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCAT 2153772 Query 153401 CAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTT 153460 ||| | || || ||||||| ||||| | |||| ||||| || | || | ||| Sbjct 2153771 CAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTT 2153712 Query 153461 GCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCG 153520 | |||| |||| || | || |||| || ||||| |||||||| |||||||| Sbjct 2153711 GGAGCGCTTCGCTTCCGGCACCGGGTAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCG 2153652 Query 153521 CACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCG 153580 | || || | | |||| |||||| | ||||| || || || || || Sbjct 2153651 CGTGACAGTCTTGGCGACTTCCTTCAGTTTCGCAAAATCGTACGTGTGGTC--CG--GCT 2153596 Query 153581 T-ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGC 153639 | ||| | |||| || || || |||||||| ||||| || | || || | Sbjct 2153595 TCACGAACATGTTCAGCGCGATTGATGCCAGATTGCAGACCGCTATTTCATCCTTGGACG 2153536 Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 ||||| ||||| || | ||| ||||| ||| || || ||||| || || || | Sbjct 2153535 AGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGT 2153476 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 153759 |||| |||||||||||||| || ||| | ||||||||||| |||| |||||||| |||| Sbjct 2153475 TGCTCTTGCGATTGCACGCATCCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCG 2153416 Query 153760 TTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCT 153816 ||||| ||| ||||| ||| ||||| || ||| | | | | ||||||| Sbjct 2153415 ATTCGATGATGGCAAACCA---CAGATCCTGAGCCTTGACCTGACGGATAAACCGGCCCT 2153359 Query 153817 CGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGG 153876 | ||||||| | ||| || |||||||| || || | | || | || |||| Sbjct 2153358 CCTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGG 2153299 Query 153877 GACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACA 153936 |||| | ||||| ||||||| |||||| |||| || | |||||| ||||||||| Sbjct 2153298 GACAATCGTGCGGGCACATCAAGCTCCACATCTCGTTCGCCTCGACGCGCTGCATGAACA 2153239 Query 153937 GATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGT 153996 |||||||||||||||| ||||| | | ||||||||| | |||||| ||| ||| Sbjct 2153238 GATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGT 2153179 Query 153997 TGCGTTTCAGATTGAG-CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCC 154055 | ||||||| ||| || | | | | ||| ||||||| || || | ||||| || Sbjct 2153178 TCTTCTTCAGATCGAGAAACTCGA-ACACATCGCCGTGCCACGGCTCGAGGTAGATCGCG 2153120 Query 154056 AGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACG 154112 | ||||| ||| || |||||||| ||||| | |||| | | |||||| ||||| Sbjct 2153119 AACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACG 2153060 Query 154113 CGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGG 154172 |||| ||| || |||| ||| | | | ||||| || ||| | | || Sbjct 2153059 CGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTC 2153000 Query 154173 GCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAG 154232 || || | || || || | ||||||||| ||| | |||| || || ||||| Sbjct 2152999 GCACGGATGCAGTGGACATTCAAGCCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCAC 2152940 Query 154233 TCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCG--AGCAAGAAAC 154290 | || ||| ||| ||||| |||||||| |||| | ||| || |||| || | Sbjct 2152939 TGCTTCAACGTGTCGTAAATGCCCTCGATGCTGTCGT--CCGACATCGTCAGCAGAAAGC 2152882 Query 154291 ACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAA 154350 | ||| | | |||||| | || | |||| ||| | || || ||| ||||||| Sbjct 2152881 AGGAAGAAAGCTGCGGACGTTGTGTCGCAGCCGCAAACAATGTAGGCGACGCATGCGTAA 2152822 Query 154351 ACAGTTTTTGGCTC----ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCG 154406 | | |||| | | || || || ||||| | |||||||| |||||| Sbjct 2152821 A----GTAACGCTCCGAGAGTAGATTATAGGTCTCTATGGCCGCATCGATATCCTCGCCG 2152766 Query 154407 TGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTG--- 154463 |||||||||| || |||||||| ||||| |||||||| || || ||| | ||| Sbjct 2152765 TGAATGCCGATGGCTACGCGCATCAGCATATGCTGCGGTCGCTCAACGA---TCTTGCCC 2152709 Query 154464 TCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAA 154523 | ||||||| || || ||| || |||||| | || ||||| ||||| | ||| Sbjct 2152708 TTGATCTTCAGCAGGTACGACCGTTCCAGCGTTTTGAAGCCAAAATAATTGTAGCCGAAA 2152649 Query 154524 TCTAGCTCAT 154533 || | |||| Sbjct 2152648 TCGCGATCAT 2152639 >seq10 Length=7496699 Score = 125 bits (138), Expect = 7e-24 Identities = 288/429 (67%), Gaps = 15/429 (3%) Strand=Plus/Minus Query 52311 AATGCGTTCGAG-CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGAT 52369 ||||| |||| ||| |||||||||| || ||||| | ||||| |||| ||||| Sbjct 495763 AATGCCATCGAAACAC-TGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGGAT 495705 Query 52370 CGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGT 52429 | |||| | | |||| | | |||||| |||| || || ||| ||||||||| | Sbjct 495704 CTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTGGTTGCGTTTGCCGCCGTCGAGGGCAT 495645 Query 52430 GtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGG 52489 || ||| ||| ||||| |||||||| || | | || | | ||| | ||||| || Sbjct 495644 CTTCTTTAGCGGGAGCTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTGATGCCGGG 495585 Query 52490 CCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG 52549 |||| ||| |||||| |||| ||||||||||| || |||||| |||||||| || Sbjct 495584 TTTGACCTTCTCGAACGAGCTGATTTCGCGCGACGAGGGCCTGCACTGCGACTTTGCCTG 495525 Query 52550 CCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG-----AGC 52604 || | |||| | ||| | ||| | || | ||| | || ||| Sbjct 495524 TCTGATGTTCAAGTACCTGGTG-CAGAA-----GCCGACG--CGCGAACGTGTGACCAGC 495473 Query 52605 ATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAG 52664 || || || |||||| ||||| ||||||| | ||| ||||| |||||||| Sbjct 495472 ATCATCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTCACGAAGGCGCTCCCGGTCGAT 495413 Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724 |||| || |||||| | |||| ||||||||||||| || || ||||| ||| Sbjct 495412 ATGCTCGGTATGAACTGTGATCTGATGTCGCAGTACATCGAGTTCGTCGCCGATCGGCTG 495353 Query 52725 TTGGTGCAG 52733 ||||| || Sbjct 495352 CTGGTGGAG 495344 >seq8 Length=9380469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | ||| | | | |||||||| ||||||||||||||| Sbjct 4936200 GCCACCACGCAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGA 4936141 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||||| || || || |||| |||| |||||||| |||||||| || Sbjct 4936140 CAGCGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 4936081 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | || || | | ||| || Sbjct 4936080 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 4936021 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||| || || ||||| || || |||||||| Sbjct 4936020 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4935973 >seq1 Length=20238125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||||||| | || || ||||| | ||||| |||| Sbjct 19807218 GACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGGCCATCCTCCAACTGTTTGCCGGCG 19807159 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| ||||| || ||||| || || || || || ||| || || | Sbjct 19807158 AAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCCTTATCTTGGATCTTGGCCTTCACA 19807099 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | || ||| ||||| | ||| | || || ||||| || ||||| Sbjct 19807098 TTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTGATGGTCTTCCCAGTGAGGGTTTTC 19807039 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 19807038 ACAAAAATCTGCAT 19807025 >seq2 Length=16623535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| || || | | | |||||||| || |||||||||||| | Sbjct 2043752 CCGCCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2043693 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| || || ||||| | |||| | |||||| || || || || Sbjct 2043692 AGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 2043633 Query 138508 ATACCTTCTTTGTC 138521 ||||| || ||||| Sbjct 2043632 ATACCCTCCTTGTC 2043619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253895303120