Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19 179 4e-40 seq1 131 2e-25 seq8 127 2e-24 seq2 93.3 4e-14 seq7 84.2 2e-11 >seq19 Length=3534686 Score = 179 bits (198), Expect = 4e-40 Identities = 1189/1876 (63%), Gaps = 87/1876 (5%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 |||||| || ||||| |||| | | ||||| || |||||||| ||||||||||| || Sbjct 2154488 GTCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTACATGCCCGT 2154429 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 ||| || ||| ||| ||| || || || || || | ||| || | || Sbjct 2154428 CTTCAGGCCCATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTTACCA--TAATTCGGC 2154371 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCC 145896 ||||| || | || | || || ||| |||||||| | | || ||||| ||| Sbjct 2154370 TCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGGCCGCC 2154311 Query 145897 ATGTCTATCATGCAC--TTTGATTTAA-TTTCCCATGCGGTTTTAAAGAGATCCTTGACG 145953 || | | || ||| ||| | || ||||||| | || || | | || || | Sbjct 2154310 ATTT---TGATACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGATG 2154254 Query 145954 TGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGC 146013 ||||| || ||||| || || ||||| | || ||||| | || | || ||||| | Sbjct 2154253 TGCTGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTTTTTC 2154194 Query 146014 AATTCTGGAGTGT---AAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACC 146070 | ||| | || | | | || || ||| ||| | | || || ||||| Sbjct 2154193 ATTTC---ATCGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAGCAAATGATGATTGACG 2154137 Query 146071 ACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAAC 146130 ||||| |||||||| | || || |||| || ||||| ||| ||||||||||| Sbjct 2154136 ACCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAAC 2154077 Query 146131 GACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAA 146190 ||||||||||| || | |||||||| || | |||||| ||||| |||| ||| | Sbjct 2154076 GACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAGC 2154017 Query 146191 GAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATG 146249 ||||| | ||||| || ||| | |||||||||| || ||| ||||||| | Sbjct 2154016 GAGTTGCGAACGCCATG-CTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACA---G 2153961 Query 146250 ATCCGTGGGATAGATATTGT---AGTTGTCGTAATGCATAGTGCC---GCGGAACAGGGG 146303 || ||||| | | |||| | ||||||| |||| | || || || | || Sbjct 2153960 CTCGGTGGG---GGTCTTGTTCCACATGTCGTACTGCAGCATCCCCTTGCTGACC---GG 2153907 Query 146304 GCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAG 146363 || |||||||| || || | || ||| |||||| || || || || |||| Sbjct 2153906 ACTGCCCTCGTACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACAACTGGCCTCCAA 2153847 Query 146364 AGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCTCGCTGT 146422 ||| |||| ||||| || ||| ||| | | ||| ||| ||||| || || | Sbjct 2153846 AGCGCCGTAGTAGATGGTTTCGAAGAT-TTGTTGGTTCAGCTTCTGCGCCTCTTCACTCT 2153788 Query 146423 CGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACG 146481 |||| ||| || || | || | || || ||||| | ||||| | |||| ||| | Sbjct 2153787 CGTACGGG-TAGCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATC 2153729 Query 146482 GGGCGGTGTTTCTTGTT---ACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCG 146538 || | ||| | |||| | ||||| || ||| ||| |||| ||| ||||| Sbjct 2153728 GGCCTGTGGCGCATGTTGGAGCGCTTCGC--TTCCGGCACCGGG-TAGTAGTTAATGTCG 2153672 Query 146539 ATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCA 146598 ||||| ||||| || || ||| |||| | || | | ||||| || | || Sbjct 2153671 ATGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGACTTCCTTCAGTTTCGCAAAATCG 2153612 Query 146599 AATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACG 146658 | || | | | | || ||| || |||| | ||||| || |||| || || || Sbjct 2153611 TACGTGT--GGTCCGGC-TTCACGAACATGTTCAGCGCGATTGATGCCAGATTGCAGACC 2153555 Query 146659 GCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATG 146718 || | || |||||| | |||| || || || | ||| ||||| ||||||||| Sbjct 2153554 GCTATTTCATCCTTGGACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATT 2153495 Query 146719 ATGCCCAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTAC 146775 |||||| || | |||||| || |||| ||||| | |||||||| ||||||||| Sbjct 2153494 GTGCCCACGTTCTGTTGGTTGCT---CTTGCGATTGCACGCATCCTTGTACAGCATGTAC 2153438 Query 146776 GGTCCCCCGGTTTCGACATTGGTCTCGACGATG--AATCTAAACAAATCTCTG-GCCTTT 146832 || | || || ||||| | | |||| |||| || | ||| ||| ||| ||||| Sbjct 2153437 GGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAAC--CACAGATC-CTGAGCCTTG 2153381 Query 146833 ACTTGTCTTTCGTACAGTTTATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAGAA 146892 || || | || | | ||| ||||| ||| | ||||||| Sbjct 2153380 ACCTGACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTCT 2153321 Query 146893 CCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTC 146952 || || || || |||||| | | | || || | || ||| | ||| Sbjct 2153320 CCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCAAGCTCCACATCTCGTTC 2153261 Query 146953 TCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCC 147012 ||| ||||| | ||| |||| ||| || | ||| ||| | | || |||||| || Sbjct 2153260 GCCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGCG 2153201 Query 147013 TTGGCGTCCTCGGAGCCCATGTTGCGTC-TCAAGTTGAGGACATCGTAAATTTCCGGATG 147071 | | ||||| ||| |||| | || ||| | ||| | ||| | | || || Sbjct 2153200 CGGACCTCCTCCTTGCCGGTGTT-CTTCTTCAGATCGAGAAACTCGAACACATCGCCGTG 2153142 Query 147072 CCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTG 147128 ||| ||||| | ||| |||| || || ||| || |||||||| ||||| | Sbjct 2153141 CCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATA 2153082 Query 147129 GCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTT---GTGGT 147185 |||| | |||| ||| |||| || | ||| | ||| || ||| ||| || | || Sbjct 2153081 GCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGT 2153022 Query 147186 GC---CGTTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCC 147236 || || |||| | || | || || || || ||| || | |||||| | Sbjct 2153021 GCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTCAAGCCAATGCCTCCGGC 2152962 Query 147237 CAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTC 147296 | |||||||||| ||| ||| | ||| || | ||| ||||| ||||||||||| || Sbjct 2152961 CGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGCCCTCGATGCTGTCGTC 2152902 Query 147297 CTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAG 147356 | || |||| || || ||| | | || ||||| || | |||||||||| Sbjct 2152901 CGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCAGCCGCAAACAA 2152842 Query 147357 CGTGGGGCTGGCGTGCGT----GAACGTGCCCAGACTCATCAATTGATACGTTTCAATGG 147412 || || || ||||| |||| || ||| | | | ||| || || |||| Sbjct 2152841 TGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGT----AGATTATAGGTCTCTATGG 2152786 Query 147413 CGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGT 147471 | | ||| | || |||||||||||| | | ||| |||||||| ||||| ||||| ||| Sbjct 2152785 C-CGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCAGCATATGCTGCGGT 2152727 Query 147472 CGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGT-CAGAGTTTTGAAACC 147530 || || | ||| | | |||| || | || || | | | | ||| |||||||| || Sbjct 2152726 CGCTCAACGATCTTGCCCTTGATCTTCAGCAGGTA-CGACCGTTCCAGCGTTTTGAAGCC 2152668 Query 147531 AAAGTACTTGTAGTCG 147546 ||| || |||||| || Sbjct 2152667 AAAATAATTGTAGCCG 2152652 >seq1 Length=20238125 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | ||||||||| || ||||||||||| ||| Sbjct 19807251 CCACCACGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGAT 19807192 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | |||||| || ||| |||||| || || ||||| ||||| Sbjct 19807191 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGA 19807132 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| || ||| || ||| | | |||| ||||||| |||||| Sbjct 19807131 ATTCCCTCCTTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACC 19807072 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || ||||| |||||||||||||| Sbjct 19807071 TCAAGCGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 19807025 >seq8 Length=9380469 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| ||||| ||| | || ||||| || ||||| ||||| ||| Sbjct 4936202 GCGCCACCACGCAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCG 4936143 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||||| ||| || ||||| || || ||| |||||| |||||||| || || Sbjct 4936142 GACAGCGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGC 4936083 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| ||| ||| | | |||| || |||| |||| Sbjct 4936082 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 4936023 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 4936022 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4935973 >seq2 Length=16623535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || ||||| ||| || || || || || Sbjct 2043734 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 2043675 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || |||||| ||||||| ||||||||||| || || || |||||||||||| | Sbjct 2043674 AGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 2043615 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 || || ||||| | |||| |||||| | ||||||||| Sbjct 2043614 ATCTTAGCCTTGACGTTCTCGATGGTGTCAGACGGCTCGACTTC 2043571 >seq7 Length=10083987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || ||||| || | | || |||||||||||| || | || | Sbjct 5671019 CGCAGGACCAGGTGCATCGTGGAGCCGTGCTGGATATTGTAATCGGAAATGATTCGCCCA 5670960 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| ||| |||| | |||||||| ||||| | ||| ||||| Sbjct 5670959 TCTTCCAGCTGCTTTCCCGCGAAGATGATGCGCTGCTGGTCGGGTGCTATACCCTCTCGC 5670900 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC-CGTACTCT-CGACTTCGACGGTCA 127076 ||| ||||| ||||| ||| | | ||| || || || |||| || | || | Sbjct 5670899 TCCTCAATTTTGCTCTTGA--TGTCCAATACCGTCTCGGACGCTACGACATCCAGCGTAA 5670842 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||||||||| |||||| ||||| || ||||| Sbjct 5670841 TCGTCTTGCCGGTCAAAGTTTTCACAAAGATTTGCAT 5670805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492651105040