Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10 109 7e-19 seq19 96.9 4e-15 >seq10 Length=7496699 Score = 109 bits (120), Expect = 7e-19 Identities = 274/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 10441 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 10500 ||||| || || | || ||| | | || || || |||| | ||||| ||||| || Sbjct 1111535 TATCAGGCGTCCACTTCCGAGCTTTACGGCAAGGTGGTGGAAACGCCACAGAATGAAAAG 1111476 Query 10501 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 10559 || ||||||||||| || || || | | |||| | | |||| | ||| |||| Sbjct 1111475 ACACCCTTCTATCCGCGCTCTCCGTACGCCTGTGCAAAACTGTACGGCT-ACTGGATCGT 1111417 Query 10560 GAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGA 10619 || ||||| |||||| | || | | |||| ||| || || || |||||||| || Sbjct 1111416 GATAAATTACCGCGAAGCGTACGACATGTTTGCCTGCAATGGCATCCTGTTCAACCATGA 1111357 Query 10620 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTATCAAACAA 10677 ||| ||||| || || |||| || || ||||| || || | ||| |||| | Sbjct 1111356 GTCTCCCCGCCGGGGAGAAAATTTTGTCACCCGCAAGATAACGCGCTCGGTGGCAAAAAT 1111297 Query 10678 ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 10737 ||| ||| | ||||| | | || |||| || ||| || | || | |||||| Sbjct 1111296 TTCGCTC--GGTCAACAGGAGTGCTTGGAGCTGGGCAATCTCGACTCGAAGCGTGACTGG 1111239 Query 10738 GGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGAC 10797 || ||||| ||||||| || || ||||||||||| | | || || || | |||| Sbjct 1111238 GGCCACGCGCAGGACTACGTCGAGGCCATGTGGCTGATGATGCAGCAGGAGAAACCGGAA 1111179 Query 10798 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 10847 || | |||| |||| || || ||||| ||||| || | || ||||| || Sbjct 1111178 GATTTTGTCATCGCCACCGGTGAGACGCACTCGGTGCGAGAATTCGTCGA 1111129 Score = 104 bits (114), Expect = 3e-17 Identities = 229/338 (68%), Gaps = 4/338 (1%) Strand=Plus/Plus Query 127343 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 127402 || || ||||| | |||| |||| ||||||| |||||| ||| |||||||||||| Sbjct 495351 AGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACAGTTCATACCGAGC 495410 Query 127403 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | | |||||||| | | || |||| ||| ||| || ||| || || || | | Sbjct 495411 ATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCACCGCATCGCGGATG 495470 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAG- 127520 ||| | | | || | | | | || ||| | || |||||| | | |||| Sbjct 495471 ATGCTGGTCACAC-GTTCGCGCGTCGGCTTCTGCACCAGGTACTTGAACA-TCAGACAGG 495528 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 |||| || ||| || |||||||| || || || || || ||||||||| || ||| | Sbjct 495529 CAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGTCAAACCCG 495588 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||| || ||||||||||||| ||||||||| || || || |||||||| | Sbjct 495589 GCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTCCCGCTAAAGAAGATGC 495648 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||||||| | |||||| ||||| Sbjct 495649 CCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAG 495686 >seq19 Length=3534686 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487 || |||||||| |||||||| || || | | |||||||| | |||||| | ||| Sbjct 2153581 AGCGCGATTGATGCCAGATTGCAGACCGCTATTTCATCCTTGGACGAGTACTCGACGATT 2153522 Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547 ||||| |||| ||||| | ||| || ||||||| ||||| ||| || ||| || Sbjct 2153521 TCCGTGCACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTG 2153462 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 |||||||||||||| ||||| || || |||||||| Sbjct 2153461 CACGCATCCTTGTACAGCATGTACGGGACGCCCGTCTC 2153424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496686020360