Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq19 237 2e-57 seq10 168 1e-36 >seq19 Length=3534686 Score = 237 bits (262), Expect = 2e-57 Identities = 419/609 (69%), Gaps = 4/609 (1%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||||| ||||| ||||| ||||| || |||||||| || ||| || | | ||| ||||| Sbjct 2154497 CTTCGATTTGTCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTA 2154438 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| ||||| |||||| ||| ||| ||||| | || || || | ||| || | Sbjct 2154437 CATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTTACCATA 2154378 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 || || ||||||| ||||||||| | ||||| ||||| ||||| | | | ||||| Sbjct 2154377 ATTCGGCTCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATC 2154318 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| |||||| || ||| |||||| ||||| ||||||||| ||| ||| | Sbjct 2154317 GGCCGCCATTTTGATACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCG 2154258 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | |||| || || | || || | || ||| || || |||| || | | | | Sbjct 2154257 GATGTGCTGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTT 2154198 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 || | || || |||||| ||| || |||| ||| | | || || | |||| Sbjct 2154197 TTTCATTTCATCGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAGCAAATGATGATTGAC 2154138 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 || ||| || || || |||||||| | || || | | ||| ||| | || ||||| Sbjct 2154137 GACCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAA 2154078 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 || |||||||||||| || ||||| |||||| || || ||||| ||||||| || || Sbjct 2154077 CGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAG 2154018 Query 204313 GGAGTTGCGCACACCGTATTTTTGG--ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATC 204370 |||||||| || || || |||| | | | |||||| ||||| || | Sbjct 2154017 CGAGTTGCGAACGCC--ATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACAGC 2153960 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 | |||| || | |||||||||| |||| | || || | ||||| || |||||| Sbjct 2153959 TCGGTGGGGGTCTTGTTCCACATGTCGTACTGCAGCATCCCCTTGCTGACCGGACTGCCC 2153900 Query 204431 TTGTACGTC 204439 | ||||||| Sbjct 2153899 TCGTACGTC 2153891 >seq10 Length=7496699 Score = 168 bits (186), Expect = 1e-36 Identities = 248/345 (72%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 159741 CCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATC 159799 || |||||| || || || || || |||||||| || | ||||| | |||||||| || Sbjct 495346 CCACCAGCAGCCGATCGGCGACGAACTCGATGTA-CTGCGACATCAGATCACAGTTCATA 495404 Query 159800 CCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCG 159859 || |||| || |||||||| | || || ||||||| ||| ||| ||||| ||| Sbjct 495405 CCGAGCATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCACCGCATCG 495464 Query 159860 GTCACAAT-CTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAG 159918 | || ||| | ||||||||| | |||||| || | ||| ||| |||| Sbjct 495465 CGGATGATGCTG-GTCACACGTTCGCGCGTCGGCTTCTGCACCA---GGTACTTGAACAT 495520 Query 159919 GAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGAT 159978 || || ||||||||||||||||| |||||||| || || || | |||||| || | | | Sbjct 495521 CAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGT 495580 Query 159979 GAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAA 160038 | |||||||| | || ||| || ||||| |||||||| || || |||||||| Sbjct 495581 CAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTCCCGCTAAA 495640 Query 160039 AAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 ||||| ||||| ||||| |||||||| || | || ||| ||||| Sbjct 495641 GAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAA 495685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141573027760