Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq8 136 9e-27 seq1 127 5e-24 seq7 109 1e-18 seq2 109 1e-18 >seq8 Length=9380469 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| ||||||||||| || | ||||||||| | || || Sbjct 4936193 CGCAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTG 4936134 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| || Sbjct 4936133 CGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCC 4936074 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| || || | | || || || | Sbjct 4936073 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 4936014 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||||||||| ||||| || || || || Sbjct 4936013 GTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTG 4935976 >seq1 Length=20238125 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || |||||||| || |||||||| || | |||||||| | | || Sbjct 19807245 CGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTG 19807186 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||| || ||||||||||| ||||| || || || ||| |||||| Sbjct 19807185 CGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCC 19807126 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| |||| ||||| | | || || || | | Sbjct 19807125 TCCTTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGC 19807066 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| |||||||||||||| || Sbjct 19807065 GTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTG 19807028 >seq7 Length=10083987 Score = 109 bits (120), Expect = 1e-18 Identities = 123/164 (75%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||||||||||||| |||||||||| ||||||||||| || || || ||| Sbjct 5670962 CCATCTTCCAGCTGCTTTCCCGCGAAGATGATGCGCTGCTGGTCGGGTGCTATACCCTCT 5670903 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||| ||| || ||| | | || || || | | | | ||||||| ||| Sbjct 5670902 CGCTCCTCAATTTTGCTCTTGATGTCCAATACCGTCTCGGACGCTACGACATCCAGCGTA 5670843 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||||||| || || | |||||||||||| ||||| |||||| Sbjct 5670842 ATCGTCTTGCCGGTCAAAGTTTTCACAAAGATTTG---CATTTT 5670802 >seq2 Length=16623535 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || |||||||| |||| ||||||||| | || ||| Sbjct 2043746 CGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTA 2043687 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || ||||||||||| || |||||||| | ||||||||| || || ||| || Sbjct 2043686 CGTCCGTCCTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCC 2043627 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || |||| | Sbjct 2043626 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGACGGCTCGACTTCCAGC 2043567 Query 199589 GTGAT 199593 ||||| Sbjct 2043566 GTGAT 2043562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178900891136857