Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq8 143 3e-29 seq1 118 1e-21 seq2 102 9e-17 seq7 100 3e-16 >seq8 Length=9380469 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | || |||||| || || ||||||||||| || |||||| | Sbjct 4936187 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCA 4936128 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| ||||||||||| | ||| | || ||||||| Sbjct 4936127 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTG 4936068 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||| || | || || || | || ||| Sbjct 4936067 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 4936008 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || ||||| || ||||| || ||||| ||||| ||| Sbjct 4936007 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 4935969 >seq1 Length=20238125 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| || | ||| |||||| || ||||||||||||||||| ||||| | Sbjct 19807239 CGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGGCCA 19807180 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | ||| ||||||||||| |||| || || || || | || | | |||||| Sbjct 19807179 TCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCCTTA 19807120 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||| | || | | |||||| || || || || | ||||||| Sbjct 19807119 TCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTGATG 19807060 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || || || ||||| ||||| || ||||| || Sbjct 19807059 GTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCATCTT 19807022 >seq2 Length=16623535 Score = 102 bits (112), Expect = 9e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| || |||||||| || ||||| Sbjct 2043717 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAA 2043658 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 2043657 GATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 2043598 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | ||||| || || || |||| |||||| Sbjct 2043597 CTCGATGGTGTCAGACGGCTCGACTTCCAGCGTGAT 2043562 >seq7 Length=10083987 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 ||||||||||| ||||| | | ||| | || || |||||||| || ||||| || | | Sbjct 5670989 TGGATATTGTAATCGGAAATGATTCGCCCATCTTCCAGCTGCTTTCCCGCGAAGATGATG 5670930 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 ||||||||||||| | | | ||| ||| || || |||||| | ||| Sbjct 5670929 CGCTGCTGGTCGGGTGCTATACCCTCTCGCTCCTCAATTTTGCTCTTGATGTCCAATACC 5670870 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 || ||| || | | ||||||| ||| || || ||||| |||| ||||| ||||||||| Sbjct 5670869 GTCTCGGACGCTACGACATCCAGCGTAATCGTCTTGCCGGTCAAAGTTTTCACAAAGATT 5670810 Query 46589 TGCATTTT 46596 |||||||| Sbjct 5670809 TGCATTTT 5670802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565228713226920