Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 269 3e-67 seq8 138 1e-27 seq1 107 2e-18 seq2 87.8 2e-12 >seq10 Length=7496699 Score = 269 bits (298), Expect = 3e-67 Identities = 315/423 (74%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 132715 TCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGT 132774 || || ||||||| ||||| |||||||||||||| |||||||| || || || | Sbjct 495345 TCCACCAGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACAGTTCATA 495404 Query 132775 CCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCG 132834 || |||| | ||||| ||||| | ||||| || |||||||| ||||| ||| Sbjct 495405 CCGAGCATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCACCGCATCG 495464 Query 132835 GTGACGATTTCCCTAACGCGCGCCGCGC-TCGGCCGTTGCACCAAATGCTTGAACATCAA 132893 || ||| | || || | |||| ||||| ||||||| | ||||||||||| Sbjct 495465 CGGATGATGCTGGTCACACGTTC-GCGCGTCGGCTTCTGCACCAGGTACTTGAACATCAG 495523 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 || ||||||||||| |||| ||||||||| | ||||| || ||||| ||| ||||| Sbjct 495524 ACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGTCAA 495583 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| ||||| || || || ||||| || ||||||||||| || || |||||| Sbjct 495584 ACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTCCCGCTAAAGAA 495643 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||||||||| || || || |||| |||||||| || |||| | ||||| | Sbjct 495644 GATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTGGCCTTCTTGCTCGA 495703 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 ||||||| ||||||||| |||||||| | || |||||||||| ||||||||||| || Sbjct 495704 GATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGTGTTTCGATGGCATT 495763 Query 133134 CAA 133136 || Sbjct 495764 GAA 495766 Score = 208 bits (230), Expect = 8e-49 Identities = 205/262 (78%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| ||| ||||||||| || ||| ||||| ||||| ||||| || || Sbjct 495880 GTACGTGTCGATCAGGAGCGAATACATCTCGCTGTGGACGTTTTCCATCGCGATCTGGAA 495939 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| ||||| ||| |||||||| || || ||| || ||||||||||| Sbjct 495940 TCCGTAGAAGCAGCGCGCTTCGGTTACCTGCACCTCCTGGCTGAACCGTTCGACCAGATT 495999 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||| ||||||||||| ||||||||||| || ||||||||| ||||||||| || Sbjct 496000 CTCGTTAACGATGCCGTCCGACGCGGCGAAAAATGCGAGCACGTGCGAGATGAAATGACG 496059 Query 133347 CTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGA 133405 ||| | ||| |||| |||||| || | ||||||| |||||||| |||||||| | Sbjct 496060 CTCACTCGGCTTC-AGCGCCTCCCAATCTTTCATGTCCTTCGACAGGTCGACCTCCTCCA 496118 Query 133406 CGGTCCAAAACGACGCCTCGGC 133427 ||||||| ||||| || ||||| Sbjct 496119 CGGTCCAGAACGATGCTTCGGC 496140 >seq8 Length=9380469 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || |||||| || Sbjct 4935970 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 4936029 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | || | || |||| ||||| ||||| ||||| | ||| Sbjct 4936030 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGAC 4936089 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | |||||| || ||||||| Sbjct 4936090 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTAC 4936149 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||||| |||| || ||| |||||||||| || | || ||| Sbjct 4936150 AACATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTGCGTGGTGGC 4936200 >seq1 Length=20238125 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || ||||| ||||| || || |||||||| | || |||||| | Sbjct 19807021 AAAGATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACGCTTGAGGTCGAGCC 19807080 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | || | || |||| || || ||||||||||| | || Sbjct 19807081 GTCGGACACGATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGAATTCCTCCAGA 19807140 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || || || | ||| ||||||||| |||| || | ||||| || |||||| Sbjct 19807141 TCAACAACGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGCACGCTATCCGACTA 19807200 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || ||||| | ||||| || ||||| |||| Sbjct 19807201 CAATATTCAGAAGGAGTCTACGCTCCACCTGGTGTTGCG 19807239 >seq2 Length=16623535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | || || ||||| | || | ||| || || Sbjct 2043610 AAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGTAAG 2043669 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| |||| || || || ||||||||||||||| ||||| | || || || Sbjct 2043670 CAGCTGGAGGACGGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 2043729 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | | ||||| Sbjct 2043730 TTGGTTCTTCGTCTTCGTGGCGG 2043752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164228288640