Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq49 93.3 3e-13 seq4 89.7 4e-12 >seq49 Length=295971 Score = 93.3 bits (102), Expect = 3e-13 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 870800 ATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCA 870859 ||||| |||| |||||| || ||| | || |||||||||||| |||||||| | |||| Sbjct 269571 ATTGTTGATTTTTCTTCGCCGAATGTAGCGAAAGAAATGCATGTTGGACATCTCCGATCG 269630 Query 870860 ACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGT 870919 || || || ||||| ||||||||| | | | || | || || ||||| || Sbjct 269631 ACGATAATCGGTGATTCTATTTGTCGTTTCCTGGAGTTCATGGGCCATGATGTACTGCGC 269690 Query 870920 ATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 870970 || ||||| | || || ||||| || || || || ||||| |||||| || Sbjct 269691 ATCAATCACATTGGCGACTGGGGCACACAGTTTGGGATGTTGATTGCTCAT 269741 >seq4 Length=12071184 Score = 89.7 bits (98), Expect = 4e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || || || || || || ||||| || || || || | || | ||||| ||||| Sbjct 8966005 CGCTTGGCGTCGAAGATTGTGTTGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCATCG 8966064 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || |||||| | || || || || || | ||||| || || || || || ||||| || Sbjct 8966065 CCGATCAGACGCTCCGTATCGGTGAAGGCCACATAGGACGGCGTCGTACGGTTACCCTGG 8966124 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || ||||||||||| || || || | || | || || || || || | || ||| Sbjct 8966125 TCGTTGGCAATAATTTCTACCTTGCCGTGCTGGAACACTCCAACGCAGCTGTAGGTCGTT 8966184 Query 518693 CCTAAATCAATACC 518706 || | ||||||||| Sbjct 8966185 CCCAGATCAATACC 8966198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780754366463926