Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19 174 2e-38 seq10 138 1e-27 >seq19 Length=3534686 Score = 174 bits (192), Expect = 2e-38 Identities = 532/803 (66%), Gaps = 31/803 (4%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||| ||||| ||||| || || || | || || || |||||||| || |||||||| Sbjct 2154103 TAGACGTTCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAA 2154044 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG---ATGCGT 106051 || || ||||| || |||| || ||| ||| |||| || | |||| || | Sbjct 2154043 GCGGTCGGCATCGGAGCCAACAGAAGCGAGTTGCGAACGCCATG---CTTGGCAATCTTT 2153987 Query 106052 TCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATT 106109 ||||| || ||| |||||| | || | | | || || |||| |||| || | | Sbjct 2153986 TCCTTCAGCACACCCCAGTTCCACAGCTCGG-TGGGGGTCTTGTTCC-ACATGTCGTACT 2153929 Query 106110 GAAGCA-CCCCTTGG-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167 | |||| ||||||| ||| ||| ||||| | ||||| || | || | | | Sbjct 2153928 GCAGCATCCCCTTGCTGACC--GGACTGCCCTCGTACGTCTCGTACGTGCCATCGCGGGC 2153871 Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 |||| ||||| || ||||||| | ||| || |||||||| ||||| | || Sbjct 2153870 GGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTT 2153811 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 || || || || || || || | | |||||| || ||| || |||| || | Sbjct 2153810 CAGCTTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCAT 2153751 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGCG-CAGTCTC 106344 || || || || | ||| || || ||||| ||||| || || ||||| | | | | Sbjct 2153750 GCCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCAC 2153691 Query 106345 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 |||| || | || |||| |||| | ||| || || || ||| |||| | || Sbjct 2153690 --CGGG-TAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGAC 2153634 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGAAGG 106462 ||| | ||||| || |||| | ||| | ||| ||||| |||| | || Sbjct 2153633 TTCCTTCAGTTTCGCAAAATCGTACGTGTG-GTCCGGCTTCACGAACATGTTC----AGC 2153579 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||||||||||| |||||| || || | |||||||| | |||||| | ||||| Sbjct 2153578 GCGATTGATGCCAGATTGCAGACCGCTATTTCATCCTTGGACGAGTACTCGACGATTTCC 2153519 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| ||| || | ||| || || |||| |||| |||||| ||||| |||||| Sbjct 2153518 GTGCACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCAC 2153459 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 ||||||||||| |||||||| || |||||||| ||| || | || || || | Sbjct 2153458 GCATCCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAAC 2153399 Query 106643 CACACATCG-GCGGCTGGTACAATGGCGT-TGGCCCGTCCCTCCGCCTCGTACTTTGTGT 106700 |||| ||| | | || | | || || | ||| |||||| |||||| ||||| Sbjct 2153398 CACAGATCCTGAGCCTTGACC--TGACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGT 2153341 Query 106701 AGAGGGCTTCAAACTCCTCACCC 106723 |||| |||||||||||| ||| Sbjct 2153340 AGAGCTTTTCAAACTCCTCTCCC 2153318 >seq10 Length=7496699 Score = 138 bits (152), Expect = 1e-27 Identities = 273/398 (69%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963 ||||||| || || | || ||| | | || ||||| ||| | ||||| || || Sbjct 1111537 TCTATCAGGCGTCCACTTCCGAGCTTTACGGCAAGGTGGTGGAAACGCCACAGAATGAAA 1111478 Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTC 7022 ||||||||||||| || ||||| |||| |||| | | |||| | ||| || Sbjct 1111477 AGACACCCTTCTATCCGCGCTCTCCGTACGCCTGTGCAAAACTGTACGGCT-ACTGGATC 1111419 Query 7023 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 7082 || | |||||||||||| | |||| ||||||| ||| || ||||| ||||||||| Sbjct 1111418 GTGATAAATTACCGCGAAGCGTACGACATGTTTGCCTGCAATGGCATCCTGTTCAACCAT 1111359 Query 7083 GAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAG-GGTATCAAAC 7140 || || || | || || | | | |||||||| ||||| || || ||| |||| Sbjct 1111358 GAGTCTCCCCGCCGGGGAGAAAATTTTGTCACCCGCAAGATAACGCGCTCGGTGGCAAAA 1111299 Query 7141 AAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATT 7200 | || | ||| || |||||| | | || |||| || | || || || | || | Sbjct 1111298 ATTTC--GCTCGGTCAACAGGAGTGCTTGGAGCTGGGCAATCTCGACTCGAAGCGTGACT 1111241 Query 7201 GGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCG 7260 |||| |||||| ||||||| || || ||||||||||| ||| | || || ||| || | | Sbjct 1111240 GGGGCCACGCGCAGGACTACGTCGAGGCCATGTGGCTGATGATGCAGCAGGAGAAACCGG 1111181 Query 7261 ACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 7298 | || | ||| | || || |||||||| || || ||| Sbjct 1111180 AAGATTTTGTCATCGCCACCGGTGAGACGCACTCGGTG 1111143 Score = 96.9 bits (106), Expect = 4e-15 Identities = 278/422 (66%), Gaps = 8/422 (2%) Strand=Plus/Plus Query 117097 AGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATG 117156 || || ||||| | || |||| ||||||| |||||| ||| |||||||||||| Sbjct 495351 AGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACAGTTCATACCGAGC 495410 Query 117157 AGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACG 117216 | || ||||| || | | || |||| | | ||| ||| ||||| || | | Sbjct 495411 ATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCACCGCATCGCGGATG 495470 Query 117217 ATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGC 117275 ||| | | | |||| || || || | | | | || |||||| | | ||| Sbjct 495471 ATGCTGGTCACACGTTCGCGCGTCGG-CTTCTGCACCAGGTACTTGAACATCAGACAGGC 495529 Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335 ||| || ||| || ||||| || || ||||| || || || |||||| | || || Sbjct 495530 AAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGTCAAACCCGG 495589 Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 117395 ||| || ||||||||||||| ||| |||| ||| ||| |||| |||||||| || Sbjct 495590 CATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTCCCGCTAAAGAAGATGCC 495649 Query 117396 CTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG-TC--AAA 117452 ||| || |||||||||| | |||||| | ||| | | ||| || || | Sbjct 495650 CTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTG---GCCTTCTTGCTCGAGAT 495706 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| |||| ||||| | |||||||||| | || || | |||| |||||| | || Sbjct 495707 CCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGTGTTTCGATGGCATTGAA 495766 Query 117513 TA 117514 || Sbjct 495767 TA 495768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970689204040