Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 136 9e-27 seq2 120 7e-22 seq7 107 4e-18 >seq1 Length=20238125 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || ||||| || || ||||| || ||||||||||| |||| || || | Sbjct 19807242 AGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGG 19807183 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | ||| || || |||||||| || |||||||| ||||||||||| || || Sbjct 19807182 CCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCC 19807123 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || ||| || ||||| || |||||||| || || ||||| || Sbjct 19807122 TTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTG 19807063 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| || || | ||||| Sbjct 19807062 ATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 19807025 >seq2 Length=16623535 Score = 120 bits (132), Expect = 7e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| |||||||| || || || ||||| |||| ||||| | || || || Sbjct 2043735 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTC 2043676 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| |||||||| | || || || ||||| ||||| || || ||||| || Sbjct 2043675 CAGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 2043616 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || |||||||||||| |||||||| || || ||||| || || Sbjct 2043615 GATCTTAGCCTTGACGTTCTCGATGGTGTCAGACGGCTCGACTTCCAGCGT 2043565 >seq7 Length=10083987 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194921 TGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTC 194980 |||| | || || ||||| | ||||| | | || ||||||||||||| || ||| Sbjct 5671024 TGAGCCGCAGGACCAGGTGCATCGTGGAGCCGTGCTGGATATTGTAATCGGAAATGATTC 5670965 Query 194981 TCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 ||||||||| |||||||| || |||||||| | || || ||||| || | || || | Sbjct 5670964 GCCCATCTTCCAGCTGCTTTCCCGCGAAGATGATGCGCTGCTGGTCGGGTGCTATACCCT 5670905 Query 195041 CTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGG 195100 || || | |||||| ||||| || | | || || || | | || || || | Sbjct 5670904 CTCGCTCCTCAATTTTGCTCTTGATGTCCAATACCGTCTCGGACGCTACGACATCCAGCG 5670845 Query 195101 TAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| |||||| || ||||||||||| || || | |||||||| Sbjct 5670844 TAATCGTCTTGCCGGTCAAAGTTTTCACAAAGATTTGCATTT 5670803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109462110915557