Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 129 5e-25 seq2 96.9 3e-15 seq8 84.2 2e-11 seq7 82.4 6e-11 >seq3 Length=13649947 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711 || || ||||| ||||| ||||| | ||||||| || ||||||||| ||||| || | Sbjct 8054801 TTAAACTTTCGCTTACATCCTTCGTAGTTCATGTATCTTATTTTACCGAAGATTTCTCTC 8054860 Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771 ||| ||||| | |||||||| | ||| || ||||||||||||||| | || ||||| Sbjct 8054861 TCCTTCCAGCCCTGATCGTGAATGCCGGCGATCGACCACATGCAACCGACGTATCCGTTC 8054920 Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGC 13815 || ||||||||||||| ||||| |||||||| ||| || || Sbjct 8054921 GGGTCGCGTCCATCCAGGCTGTACCGGTCGTTGAGATAGATTGC 8054964 >seq2 Length=16623535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | ||| | ||| || |||||||| || || || || || ||||| ||| Sbjct 2043755 TTTCCGCCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2043696 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||| | | || |||| |||||||| || || ||||||||||| ||||| || Sbjct 2043695 GACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGG 2043636 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| || || || || || || || || || | || | |||||||||| || Sbjct 2043635 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGACGGCTCG 2043576 Query 101420 ACTTCAAGAGTGA 101432 ||||| || |||| Sbjct 2043575 ACTTCCAGCGTGA 2043563 >seq8 Length=9380469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || || ||||| |||| | || | |||| |||| || Sbjct 4936176 ATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCATCCTCCAGCTG 4936117 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| || || ||||||||||| || || || || || || Sbjct 4936116 CTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 4936057 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || || || | || || ||||| || | || || || || Sbjct 4936056 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGT 4935997 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 4935996 GAGGGTTTTGACGAAGATCTGCAT 4935973 >seq7 Length=10083987 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/189 (70%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344 || ||||||||||||| || ||| |||| |||| ||||| || || || || | Sbjct 5670989 TGGATATTGTAATCGGAAATGATTCGCCCATCTTCCAGCTGCTTTCCCGCGAAGATGATG 5670930 Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT----TTGTTTTACAATTTC 101400 ||||| || ||||| | || || ||| || | |||||| ||| | | ||| Sbjct 5670929 CGCTGCTGGTCGGGTGCTATACCCTCTCGCTCCTCAATTTTGCTCTTGATGTCCAA---- 5670874 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 ||| || || |||| | | || || || || | ||| |||||||| |||||||| ||||| Sbjct 5670873 TACCGTCTCGGACGCTACGACATCCAGCGTAATCGTCTTGCCGGTCAAAGTTTTCACAAA 5670814 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 5670813 GATTTGCAT 5670805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271778559447