Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19 282 8e-71 seq10 150 3e-31 >seq19 Length=3534686 Score = 282 bits (312), Expect = 8e-71 Identities = 873/1325 (66%), Gaps = 72/1325 (5%) Strand=Plus/Minus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| | ||||| | |||||| || || || ||||| | || | ||| | ||| |||||| Sbjct 2154148 TGATGATTGACGACCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTG 2154089 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| ||||||||| |||| ||||| || ||| || || ||||| ||| Sbjct 2154088 TACGGCTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGA 2154029 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAG 213083 |||| ||| || ||| | || || |||| | | || | ||| | ||||| Sbjct 2154028 GCCAACAGAAGCGAGTTGCGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAG 2153969 Query 213084 TCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 | ||| ||| ||| ||| | |||||||||||| |||||| || || Sbjct 2153968 TTCCA-----CAGCTCGGTGGGGGTCTT----GTTCCACATGTCGTACTGCAGCATCCCC 2153918 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 ||||| || || ||||||| ||| | ||| | ||||| ||||||||| || Sbjct 2153917 TTGCTGACCGGACTGCCCTCGTACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACAA 2153858 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 |||| || || |||||||||||||||| || || | ||| ||||||| ||| Sbjct 2153857 CTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCC 2153798 Query 213264 TCTGG------GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 ||| | ||| | || |||||| ||| ||| |||| |||| ||||| Sbjct 2153797 TCTTCACTCTCGTACGGGTAGCGCATCAGAATG------AACGCATCGGCCATGCCCTGC 2153744 Query 213318 ACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGG 213374 || ||||| ||||| || ||||| | || ||| || ||| | ||| || ||| Sbjct 2153743 ACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCT---TCCGGCACCGGG 2153687 Query 213375 TAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCC 213434 || |||| ||||||||| ||||| |||||||| ||| | |||| ||| | | Sbjct 2153686 TAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGACTTCCTTC 2153627 Query 213435 AGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTG 213494 || | | | || | || || | || || ||| ||| ||| ||||| Sbjct 2153626 AGTTTCGCAAAATCGTACGTGTGGTCCGG---CTTCACGAACATGTTCAGCGCGATTGAT 2153570 Query 213495 GCCAGGTTGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551 ||||| ||||| || || | | |||| || | |||||| | ||| || |||||| Sbjct 2153569 GCCAGATTGCAGACCGCTATTTCATCCTTGGAC---GAGTACTCGACGATTTCCGTGCAC 2153513 Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATC 213610 ||||| ||| ||| ||||||| |||||| ||||| ||| ||| | ||| | ||| Sbjct 2153512 AGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTT-GCGATTGCACGCATC 2153454 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAG 213668 |||||| |||||||| ||| || ||||| | ||| || | | || ||| ||| Sbjct 2153453 CTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGAT--GGCAAACCAC 2153396 Query 213669 AGGTACCTG-GCCTTGACCACCCGCCTGACAGCT---CCGGGCGTAGC-CTCGTA--CTG 213721 || | |||| ||||||||| |||| | | |||| | | |||||| ||| Sbjct 2153395 AGAT-CCTGAGCCTTGACC-------TGACGGATAAACCGGCCCTCCTTCTCGTAGCCTG 2153344 Query 213722 TTCGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGACAGGA-TGCG 213779 | |||||||| | || || | ||||| || | | | ||||| ||||| |||| Sbjct 2153343 T--GTAGAGCTTTTCAAACTCCTCTCCCCACGAATCCGAC-AGTCCGGGACAATCGTGCG 2153287 Query 213780 GGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 || ||||| | |||||| | ||| | ||| ||| | |||||||||||| ||||| || Sbjct 2153286 GG-CACATCAAGCTCCACATCTCGTTCGCCTC-GACGCGCTGCATGAACAGATCCGGCAC 2153229 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 ||| || ||| ||||| ||| | | | ||| ||| || | ||| || ||| Sbjct 2153228 CCAGAGGGCGTAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAG 2153169 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 ||| ||||| || || | || ||||||||||||| | |||||| || || || || || Sbjct 2153168 ATCGAGAAACTCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGG 2153109 Query 213959 CCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGG 214015 | |||| ||||||||||| || | || ||||| ||| |||||| | || Sbjct 2153108 GCGCTTGTTGCCGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGG 2153049 Query 214016 TACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGG-- 214073 |||||||||||||| |||||| || || || || |||| || || | | | Sbjct 2153048 CACCAGCCCGTTGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCA 2152989 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 || ||| | || || ||||| ||||| |||| || |||| ||||| || ||| Sbjct 2152988 GTGGACATTCA-AG-CCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAAC 2152931 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || ||||| | |||||||| || | | |||||| |||||| || ||| Sbjct 2152930 GTGTCGTAAATGCCCTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGC 2152871 Query 214194 TGGGG 214198 || || Sbjct 2152870 TGCGG 2152866 >seq10 Length=7496699 Score = 150 bits (166), Expect = 3e-31 Identities = 294/430 (68%), Gaps = 11/430 (3%) Strand=Plus/Plus Query 47941 GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGAT 48000 ||||| || ||||||| |||| |||||| |||||||||| | ||||| || Sbjct 495338 GCCCAACTCCACCAGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACA 495397 Query 48001 GTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCAC 48060 |||||| || | | || || | ||||| ||||| ||||||| ||| ||| |||| Sbjct 495398 GTTCATACCGAGCATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCAC 495457 Query 48061 GGCTTCCCCCACAAT-CTGCTTA-ACG--CGGGACTCTGAGGGTTTGTTGCGCAGGTGCT 48116 || || | | || ||| | | ||| || | || || || | ||||| || Sbjct 495458 CGCATCGCGGATGATGCTGGTCACACGTTCGCGCGTC----GGCTTCTGCACCAGGTACT 495513 Query 48117 TGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGT 48176 || | | || ||||||||||| | ||||| ||| ||||| || || ||| ||| Sbjct 495514 TGA---ACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGT 495570 Query 48177 TGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG 48236 | |||||| | ||| ||||| | |||| || || ||||||||||| || ||||| Sbjct 495571 TCGAGAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGC 495630 Query 48237 AGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG 48296 || |||||||||||||| || || || ||||| | || ||| || || | Sbjct 495631 TCCCGCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTGG 495690 Query 48297 CGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG 48356 | |||||| ||||||||| ||||||||||| ||||||||||| | ||| |||| | Sbjct 495691 CCTTCTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGTG 495750 Query 48357 TCTCTATGGC 48366 | || ||||| Sbjct 495751 TTTCGATGGC 495760 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| || ||||||| || ||||||||| || |||||| || || || ||||| ||||| Sbjct 3549923 CTTCAGATCCTTCACCTTGTCCTCCAGCTTCGAGATGCGCTCGAGCTTCCGCCGCCGGCA 3549864 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| |||||||| || | ||| || ||| ||||||||| ||||| Sbjct 3549863 CTTGGAGGCGGCCACCCGGTTCCGCAGGCGCTTCCGCTCCAGCTTGATGCGCTCCTGCGA 3549804 Query 241609 CTCCATGTCGATCGG 241623 |||||||||||||| Sbjct 3549803 GTCCATGTCGATCGG 3549789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931516835856640