Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq19 194 3e-44 seq10 125 1e-23 >seq19 Length=3534686 Score = 194 bits (214), Expect = 3e-44 Identities = 746/1149 (65%), Gaps = 47/1149 (4%) Strand=Plus/Minus Query 221496 GCATCTGAAAGA---CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCC 221552 ||||| ||| || | ||||||| ||||| || ||||||||||| |||||||| | | Sbjct 2153775 GCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGTGGCGCA 2153716 Query 221553 TGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGG 221611 ||||||| ||| |||||| ||||| || || |||| | |||||| | ||||| ||| Sbjct 2153715 TGTTGGA-GCGCTTCGCTTCCGGCACCGGGTAGTAGTTAATGTCGATGATTTTGTTCAGG 2153657 Query 221612 TTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCG 221671 || | |||| || | || || |||| ||| | || ||| Sbjct 2153656 TTGCGCGTGACAGTCTTGGCGACTTCCTTCAGTTTCG------------CAAAATCGTA- 2153610 Query 221672 CCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCC 221731 ||| |||| || | ||| || ||| || || | ||||| || || || || Sbjct 2153609 -CGT-GTGGTCCGGCTTCACGAACATGTTCAGCGCGATTGATGCCAGATTGCAGACCGCT 2153552 Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 | || |||||| | |||| | ||| || || || ||||| ||||||||| || Sbjct 2153551 ATTTCATCCTTGGACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATTGTG 2153492 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 |||| || | || || |||||||||| || |||||||| ||||| | || || Sbjct 2153491 CCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATCCTTGTACAGCATGTACGGGACG 2153432 Query 221852 CCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACC-GTCC 221909 || ||||| | ||| | | | || ||| || || ||| || | ||| | | Sbjct 2153431 CCCGTCTCGACCTGCGATTCGATGATGGCAAACCACAGATC-CTGAGCCTTGACCTGACG 2153373 Query 221910 TCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGT 221969 | || | ||||| ||| || || || || |||||| | ||||||| || || Sbjct 2153372 GATAAACCGG-CCCTC---CTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTCTCCCC 2153317 Query 221970 ACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGACTCCAGTGCTTGTTGTCT 222028 ||| || ||| || ||||| | ||||| ||||||| ||||| || ||| | Sbjct 2153316 ACGAATCCGACAGTCCGGGACAATCGTGCGGG-CACATCAAGCTCCACATCTCGTTCGCC 2153258 Query 222029 TTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGC 222088 | ||| | ||||||||| || ||||| | ||| || || | || | || | | || Sbjct 2153257 TCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGCGCGG 2153198 Query 222089 TGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCAC 222148 ||||||| |||| |||| ||| ||||||| | |||||| || | || |||||||| Sbjct 2153197 ACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCGAACACATCGCCGTGCCAC 2153138 Query 222149 GGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTC 222208 ||||| || |||| || | || ||||| ||||||||||| ||||| || || | | Sbjct 2153137 GGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGC 2153078 Query 222209 TCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCC 222268 | |||| ||| ||| || |||| ||||| |||||||| ||||| ||||| Sbjct 2153077 GCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGTGCCT 2153018 Query 222269 TTAATGTACGCACCGCCGGCCCTCAGGTTACTGG-CAGACATGCCGATACCACCGGCGTG 222327 ||||||| || || | | | | ||| || || ||| || || ||||| Sbjct 2153017 GCGATGTACGTTCCCTTCGCACGGATG-CAGTGGACATTCAAGCCAATGCCTCCGGCCGA 2152959 Query 222328 TTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT 222387 ||||| |||| ||||| ||| | ||||| |||||||| || ||| ||| Sbjct 2152958 CTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGCCCTCGATGCTGTCGTCC-- 2152901 Query 222388 GACGT--TCAGCAGAAAACAAGACGACATCTG-AGATTTGGTGGAACAGGCGTTAAACAG 222444 ||| | |||||||||| || || || | ||| || | ||| ||| || ||||| Sbjct 2152900 GACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCAGCCG-CAAACAA 2152842 Query 222445 CGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCT 222504 || || || || |||||||| | | || | |||| || ||||||| | | Sbjct 2152841 TGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGATTATAGGTCTCTATGGCCGC 2152782 Query 222505 GGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTC 222564 |||| | || |||||||| ||||| | ||| ||| | ||| || | ||| Sbjct 2152781 ATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCAGCATATGCTGCGGTCGCTC 2152722 Query 222565 CACAGGA-----CCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCA 222619 || || ||||| || || ||||||||||| |||||| || ||||| ||| Sbjct 2152721 AAC--GATCTTGCCCTT-GATCT--TCAGCAGGTACGACCGTTCCAGCGTTTTGAAGCCA 2152667 Query 222620 AAGTAGTTG 222628 || || ||| Sbjct 2152666 AAATAATTG 2152658 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 221117 TTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176 || || || ||||| || ||||| ||||| | || | ||| | ||| |||||| |||| Sbjct 2154142 TTGACGACCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGC 2154083 Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236 |||| |||||||||||||| |||||| || ||| ||||| ||||| || |||| | Sbjct 2154082 TCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAAC 2154023 Query 221237 AGCAGACTGTTGCG 221250 || || |||||| Sbjct 2154022 AGAAGCGAGTTGCG 2154009 >seq10 Length=7496699 Score = 125 bits (138), Expect = 1e-23 Identities = 229/330 (69%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 25794 TGCCATCGAGCACA-TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCA 25852 ||||||||| ||| | || || | |||| |||||| ||||| |||| |||||| Sbjct 495761 TGCCATCGAA-ACACTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCT 495703 Query 25853 ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCT 25912 ||| ||| || | |||||||||||| |||| || ||||| || || |||||||||| Sbjct 495702 CGAGCAAGAAGGCCAACTTTGGCGAGCGGGTGGTTGCGTTTGCCGCCGTCGAGGGCATCT 495643 Query 25913 TTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGC 25972 | || ||||| || || ||||| |||||||| ||| || ||| ||||| || Sbjct 495642 TCTTTAGCGGGAGCTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTGATGCCGGGTT 495583 Query 25973 TGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCC 26032 || ||| || |||||||| || | |||||||| || ||| | || |||||||| | Sbjct 495582 TGACCTTCTCGAACGAGCTGATTTCGCGCGACGAGGGCCTGCACTGCGACTTTGCCTGTC 495523 Query 26033 TGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCT--ACAGTATCAT 26090 || | | || | || || | || || || | | | || ||| | ||| ||||| Sbjct 495522 TGATGTTCAAG---TACCTGGTGCAGAAGCCGACGC--GCGAACGTGTGACCAGCATCAT 495468 Query 26091 CAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | || || ||| ||||||| ||||||| Sbjct 495467 CCGCGATGCGGTGCTGATCGAGCAGGAGTT 495438 Score = 86.0 bits (94), Expect = 1e-11 Identities = 173/253 (68%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCT-ATCCA 25570 |||||||| || ||| | || ||| | ||||||||| | | ||| | || || | | Sbjct 496126 CTGGACCGTGGAGGAGGTCGACCTGTCGAAGGACATGAAAGATTGGGAGGCGCTGAAGCC 496067 Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAG 25630 || |||| ||||| || | ||||| | ||||| || || || || || || || | Sbjct 496066 GAGT-GAGCGTCATTTCATCTCGCACGTGCTCGCATTTTTCGCCGCGTCGGACGGCATCG 496008 Query 25631 TGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTT 25690 | |||||||||||| ||| | |||| | ||| |||||| || || || | Sbjct 496007 TTAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGGTAACCGAAGCGCGCTGCT 495948 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750 ||||||| |||||||| || || ||||| || ||| ||| ||||| | ||| |||| Sbjct 495947 TCTACGGATTCCAGATCGCGATGGAAAACGTCCACAGCGAGATGTATTC---GCTCCTGA 495891 Query 25751 T---GACGTACAT 25760 | |||||||| Sbjct 495890 TCGACACGTACAT 495878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828881922240