Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19 183 4e-41 seq10 113 5e-20 >seq19 Length=3534686 Score = 183 bits (202), Expect = 4e-41 Identities = 531/800 (66%), Gaps = 23/800 (3%) Strand=Plus/Plus Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC 75858 ||| |||||||||||| ||||||||| || || ||||||| | | || || | Sbjct 2153318 GGGAGAGGAGTTTGAAAAGCTCTACACAGGCTACGAGAAGGAGGGCCG-GTTTATCCGTC 2153376 Query 75859 TGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 | | || | | | || | ||| || || || |||| ||| ||||| || | Sbjct 2153377 AGGTCAAGGCTCAGGATCTGTGGTTTGCCATCATCGAATCGCAGGTCGAGACGGGCGTCC 2153436 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | || ||||| ||||||||||| || || ||||| |||||| |||| |||| |||| Sbjct 2153437 CGTACATGCTGTACAAGGATGCGTGCAATCGCAAGAGCAACCAACAGAACGTGGGCACAA 2153496 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 ||||| ||||||| || ||||||||||| | |||||| | |||||||| | || | Sbjct 2153497 TCAAGTGCTCAAACCTGTGCACGGAAATCGTCGAGTACTCGTCCAAGGATGAAATAGCGG 2153556 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAG--AGACTCGCACTTT 76095 | |||||| ||||||||||||| || | |||| ||||| ||| | ||| | Sbjct 2153557 TCTGCAATCTGGCATCAATCGCGCT----GAACATGTTCGTGAAGCCGGAC-CACACGTA 2153611 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 |||| || ||||| | ||| || | |||| ||| || || || ||| | |||| Sbjct 2153612 CGATTTTGCGAAACTGAAGGAAGTCGCCAAGACTGTCACGCGCAACCTGAACAAAATCAT 2153671 Query 76156 TGACAGAAATTTTTATCCCGTTGAGACTG-CGCGAA--AGTCTAATATGCGACACAGACC 76212 |||| || | || |||| | | | | ||||| || || ||||| ||||| || Sbjct 2153672 CGACATTAACTACTA-CCCG--GTGCCGGAAGCGAAGCGCTCCAACATGCGCCACAGGCC 2153728 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGA 76272 || ||| | || || || || | || |||| || ||| || |||||| | | || Sbjct 2153729 GATCGGTATCGGCGTGCAGGGCATGGCCGATGCGTTCATTCTGATGCGCTACCCGTACGA 2153788 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 || || || || || |||| | ||||| |||||||| || ||| | | Sbjct 2153789 GAGTGAAGAGGCGCAGAAGCTGAACCAACAAATCTTCGAAACCATCTACTACGGCGCTTT 2153848 Query 76333 GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 |||||| |||||||| |||| | | | || | || ||||| | ||||| ||| Sbjct 2153849 GGAGGCCAGTTGTGAGCTGGCCGCCCGCGATGGCACGTACGAGACGTACGAGGGCAGTCC 2153908 Query 76393 CGCGTC-CCAAGGGG-TGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC 76450 ||| ||||||| |||| |||| || |||| |||| || || | | | || Sbjct 2153909 --GGTCAGCAAGGGGATGCTGCAGTACGACATGT-GGAACAAGACCCCCA-CCGAGCTGT 2153964 Query 76451 G--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508 | |||||| ||| || |||||| || || | || |||| ||| ||| || Sbjct 2153965 GGAACTGGGGTGTGCTGAAGGAAAAGATTGCCAAGCATGGCGTTCGCAACTCGCTTCTGT 2154024 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 |||| || ||||| || || |||||||| || |||||||| || || || | || || | Sbjct 2154025 TGGCTCCGATGCCGACCGCTTCCACCGCGCAGATCTTGGGCAACAACGAGTCGTTCGAGC 2154084 Query 76569 CATACACAACAAACATCTAC 76588 | ||||| | ||| ||||| Sbjct 2154085 CGTACACTTCGAACGTCTAC 2154104 >seq10 Length=7496699 Score = 113 bits (124), Expect = 5e-20 Identities = 291/440 (66%), Gaps = 4/440 (1%) Strand=Plus/Plus Query 177528 GATCTCCTTTCCAACCTCTTTGAAGCACATTTCAACAAACTGCCTCACAGAGTGTGTCTC 177587 |||||| ||||| | | ||| || |||| || || | | ||| ||||| ||||| Sbjct 1111098 GATCTCGCGTCCAATGTGCTGGAACGACTTTTCGACGAATTCTCGCACCGAGTGCGTCTC 1111157 Query 177588 CCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTC 177647 || || |||| ||| | || || | | || || || | ||| ||||||||||| || Sbjct 1111158 ACCGGTGGCGATGACAAAATCTTCCGGTTTCTCCTGCTGCATCATCAGCCACATGGCCTC 1111217 Query 177648 AACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAA 177707 || ||||||| || || |||||||| | | || ||| || || || || | | | Sbjct 1111218 GACGTAGTCCTGCGCGTGGCCCCAGTCACGCTTCGAGTCGAGATTGCCCAGCTCCAAGCA 1111277 Query 177708 CTCTCTCTCACCTTTCACAATTTGTTTGACGCC-ATC-AGTAATCTTCTTTGTGACAAAG 177765 ||| | ||| | |||| |||| | || | | || ||||| |||||||| Sbjct 1111278 CTCCTGTTGACCGAGCGAAATT--TTTGCCACCGAGCGCGTTATCTTGCGGGTGACAAAA 1111335 Query 177766 TCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCA 177825 | | || || | || || || |||||||| ||||| || ||||||| |||| | Sbjct 1111336 TTTTCTCCCCGGCGGGGAGACTCATGGTTGAACAGGATGCCATTGCAGGCAAACATGTCG 1111395 Query 177826 TAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACG 177885 || | ||| ||||||||| | |||| ||||| || || ||| | | | || Sbjct 1111396 TACGCTTCGCGGTAATTTATCACGATCCAGTAGCCGTACAGTTTTGCACAGGCGTACGGA 1111455 Query 177886 GATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTACCAAACATC 177945 || || || ||||||||||||| ||| | ||||| ||||| || || || | | | Sbjct 1111456 GAGCGCGGATAGAAGGGTGTCTTTTCATTCTGTGGCGTTTCCACCACCTTGCCGTAAAGC 1111515 Query 177946 TCCGAAGTTGAGGCTTGGTA 177965 || ||||| || || || || Sbjct 1111516 TCGGAAGTGGACGCCTGATA 1111535 Score = 96.9 bits (106), Expect = 4e-15 Identities = 278/422 (66%), Gaps = 8/422 (2%) Strand=Plus/Minus Query 64988 TATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAAT 65047 |||| | |||||| |||| | || || | |||||||||| | ||||| |||| | Sbjct 495768 TATTCAATGCCATCGAAACACTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACT 495709 Query 65048 GGTTT--GA-CACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGG 65104 || | || || ||| | | ||| | |||||| | |||||||||| || | Sbjct 495708 GGATCTCGAGCAAGAAGGC---CAACTTTGGCGAGCGGGTGGTTGCGTTTGCCGCCGTCG 495652 Query 65105 AGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCA 65164 |||| |||||||| |||| ||| ||| |||| ||| ||||||||||||| || | Sbjct 495651 AGGGCATCTTCTTTAGCGGGAGCTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTGA 495592 Query 65165 TGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGT 65224 |||| || | |||||| || || || ||||| || || ||||| || ||| || | Sbjct 495591 TGCCGGGTTTGACCTTCTCGAACGAGCTGATTTCGCGCGACGAGGGCCTGCACTGCGACT 495532 Query 65225 TTGCCGTGGAGCTCTTCAAG-ACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCC 65283 ||||| | | |||||| || | | | | || || || |||| | | | | Sbjct 495531 TTGCCTGTCTGATGTTCAAGTACCTGGTGCAGAAG-CCGACGCGCGAACGTGTGACCAGC 495473 Query 65284 ATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAAT 65343 ||| | || ||||| ||| ||| | | |||| || | | || ||||| || Sbjct 495472 ATCATCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTCACGAAGGCGCTCCCGGTCGAT 495413 Query 65344 CTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTC 65403 | |||||||||||| ||| |||||| ||||||| |||| || | ||||| || Sbjct 495412 ATGCTCGGTATGAACTGTGATCTGATGTCGCAGTACATCGAGTTCGTCGCCGATCGGCTG 495353 Query 65404 CT 65405 || Sbjct 495352 CT 495351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559376288480