Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq20 141 1e-27 seq10 136 5e-26 seq19 134 2e-25 seq705 132 6e-25 seq4 129 7e-24 >seq20 Length=4192108 Score = 141 bits (156), Expect = 1e-27 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || || |||||||||||||||||||| | | | Sbjct 1465930 GCTTGGCCAGCTCGCCGGGCAGCAGCAACCGGACGGCGGTCTGGATCTCGCGGGAGGTAA 1465989 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||||||| |||| || |||| | Sbjct 1465990 TGGTGGAGCGCTTGTTGTAATGTGCCAGCCGGGACGCCTCGGCCGCGATCCGCTCGAAGA 1466049 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| ||||| ||| |||||||| ||| |||| Sbjct 1466050 TGTCGTTGACGAAGCTGTTCATGATGCTCATCGCCTTCGACGAGATGCCGGTGTCCGGGT 1466109 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 1466110 GGACCTGCTTCAGCACCTTGTAGATG 1466135 >seq10 Length=7496699 Score = 136 bits (150), Expect = 5e-26 Identities = 165/222 (74%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| |||| ||||| |||| | || ||||| ||||| |||||| Sbjct 495546 CCCTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGTCAAACCCGGCATCAGGCCCCGCTTC 495605 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA-AAGATGCCCTCGACGGCGGCAAA 869298 || ||||| || |||||| ||| || |||| ||| ||||||||||||||||||||||| Sbjct 495606 TTCAGCCAGAAAATGGCGGCGAAGCT-CCCGCTAAAGAAGATGCCCTCGACGGCGGCAAA 495664 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGC 869355 | | | ||||||| ||||| | | ||| |||| | |||||| |||| ||| Sbjct 495665 CGCAACCACCCGCTCGCCAAAGTT------GGCCTTCTTGCTCGAGATCCAGTTCAGCGC 495718 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 |||||||||||| ||| |||| |||||| || |||||||| Sbjct 495719 CCAGTCGGCCTTCTTCTTCACGCACGGCAGTGTTTCGATGGC 495760 Score = 107 bits (118), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| ||| || || ||||||||||| ||||| ||| | | | || | || || || Sbjct 495913 GTGGACGTTTTCCATCGCGATCTGGAATCCGTAGAAGCAGCGCGCTTCGGTTACCTGCAC 495972 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||||| ||||||| || |||| |||||| ||||||||||| ||||||||||| Sbjct 495973 CTCCTGGCTGAACCGTTCGACCAGATTCTCGTTAACGATGCCGTCCGACGCGGCGAAAAA 496032 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTC-GTCGTCGCTGAGCGACACCCAGTGGACGG 869813 || || |||||| ||| || || ||||| ||| | | |||| | |||| | Sbjct 496033 TGCGAGCACGTGCGAGATGAAATGACGCTCACTCGGC-TTCAGCGCCTCCCAATCTTTCA 496091 Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| ||||| |||||||| ||||||||| ||| || ||||||| Sbjct 496092 TGTCCTTCGACAGGTCGACCTCCTCCACGGTCCAGAACGATGCTTCGGCCT 496142 >seq19 Length=3534686 Score = 134 bits (148), Expect = 2e-25 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||| |||||||| |||| ||| ||||||| ||||| ||||| || ||||| Sbjct 2153096 GCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTT 2153037 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||| ||||| || | ||| | || || || | ||| | || Sbjct 2153036 GGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTCAA 2152977 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| ||||| ||||||||||| || || ||||||||||| || | ||||||||| ||||| Sbjct 2152976 GCCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGCC 2152917 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283 |||||| |||| || ||| || |||||||| || || Sbjct 2152916 CTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGA 2152875 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1628466 CCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAG 1628525 ||| || ||||| || | ||||||||| ||| ||||||||||||| |||||| || || Sbjct 2153228 CCAGAGGGCGTAGAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAG 2153169 Query 1628526 GTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTT 1628585 ||||| | |||| | ||| ||||||||||||| |||||| || || || || Sbjct 2153168 ATCGAGAAACTCGAACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGG 2153109 Query 1628586 GCGCTTGCCGCCGCC 1628600 ||||||| |||||| Sbjct 2153108 GCGCTTGTTGCCGCC 2153094 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1627864 AACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGG 1627923 ||| | ||||| | |||||||||||||| || ||||||| |||||||| ||| ||| | Sbjct 2153764 AACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGC 2153705 Query 1627924 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGC 1627975 || || ||||||||||||| ||| |||||||| | ||| ||||||| Sbjct 2153704 TTCGCTTCCGGCACCGGGTAGTAGTTAATGTCGATGATTTTGTTCAGGTTGC 2153653 >seq705 Length=18649 Score = 132 bits (146), Expect = 6e-25 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| || ||||| |||||||| ||||||| |||||| |||||||| ||||||| Sbjct 15482 CAGACGAACGGCAGTCTGGATTTCGCGCGACGTGATCGTCGAACGCTTGTTGTAGTGCGC 15541 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| ||| ||| |||| | ||||||| |||| |||||||| || || |||||||| Sbjct 15542 CAGCCGGGAGGCTTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAAACTGTTCATGAT 15601 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 ||||| |||| || |||||| ||| || ||||| ||||| |||||||||||||| Sbjct 15602 GCTCATCGCCTTGGACGATATGCCCGTGTCCGGATGCACTTGCTTCAGCACCTTGTAGAT 15661 Query 1254548 G 1254548 | Sbjct 15662 G 15662 Score = 132 bits (146), Expect = 6e-25 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| || ||||| |||||||| ||||||| |||||| |||||||| ||||||| Sbjct 16088 CAGACGGACGGCAGTCTGGATTTCGCGCGACGTGATCGTCGAACGCTTGTTGTAGTGCGC 16147 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| ||| ||| |||| | ||||||| |||| |||||||| || || |||||||| Sbjct 16148 CAGCCGGGAGGCTTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAAACTGTTCATGAT 16207 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 ||||| |||| || |||||| ||| || ||||| ||||| |||||||||||||| Sbjct 16208 GCTCATCGCCTTGGACGATATGCCCGTGTCCGGATGCACTTGCTTCAGCACCTTGTAGAT 16267 Query 1254548 G 1254548 | Sbjct 16268 G 16268 >seq4 Length=12071184 Score = 129 bits (142), Expect = 7e-24 Identities = 244/348 (70%), Gaps = 11/348 (3%) Strand=Plus/Minus Query 732963 AAGCGCGACAAGTCGACCATCCTGCGCACGAACGAGCCCGCCACGGTGCACCGCGTGGTG 733022 ||||| ||| ||| || ||||||||| ||| ||| | || ||| ||| || Sbjct 2921351 AAGCGAGACGGGTCCACGTTCCTGCGCAACTCCGAAACCGGTATCGTCGACCAGGTGATG 2921292 Query 733023 GTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGAT-CGTGACGCGCGCCATGCGCCA 733081 |||||| |||| |||| ||| ||| | |||||| || | ||| | ||||| | Sbjct 2921291 CTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATTCGCGT-GCGGTCGGTGCGC-A 2921234 Query 733082 GCCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGC- 733139 |||| || | |||||||| | | || |||||||| || ||||| ||| |||| | Sbjct 2921233 TCCCGCAGATCGGCGACAAGTTTGCATCCCGCCACGGTCAGAAGGGTACCTGCGGCATCC 2921174 Query 733140 -GTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGT 733198 || | | ||| ||||||||||| | || || ||| ||| |||||| || ||| | Sbjct 2921173 AGTAC-CGCCAG-GAGGACATGCCGT--TCACCT-GCGAGGGCATCACGCCAGATATCAT 2921119 Query 733199 GATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCT 733258 |||||||||||||||||||||||||| ||||| || ||| | || ||||| | ||| Sbjct 2921118 CATCAACCCGCACGCCATCCCGTCGCGTATGACGATCGGCCATTTGATCGAGTGCATCCA 2921059 Query 733259 GGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 ||||||| | | || | ||||| | ||||| |||| ||||| || Sbjct 2921058 GGGCAAGCTCGGCTCGAACAAGGGCGAAATCGGTGACGCGACGCCGTT 2921011 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/168 (73%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 1850321 CTGCACGGCACGGCGGGCATCGTCCACCGCGACCTCAAGTCGTCCAACCTGCTGGTGACC 1850380 ||||||| || ||||||| |||| || ||| |||||||| |||| ||||| | | Sbjct 8474116 CTGCACG---CGAAGGGCATCATCCATCGGGACATCAAGTCGGACAACGTGCTGCTCGGC 8474060 Query 1850381 GACGACTACTCGGTCAAGGTGGCCGACTTTGGCTT-TGCGCGCATCAAGGAGGCCAACGC 1850439 ||| |||||| |||||| ||||||||||||| ||||| || || |||| | ||| Sbjct 8474059 ATGGACGGCTCGGTGAAGGTGACCGACTTTGGCTTCTGCGC-CAACATCGAGGGCGACGA 8474001 Query 1850440 G-ACCATGACCCGGTG--CGGCACGCCCTGCTGGACGGCGCCCGAGGT 1850484 | | | | || || ||||||||| | ||||| |||||| ||||| Sbjct 8474000 GAAGCGGCAGACGATGGTCGGCACGCCGTACTGGATGGCGCCGGAGGT 8473953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107026689319607