Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq19 347 1e-90 seq1 136 4e-27 seq8 131 2e-25 seq2 87.8 2e-12 >seq19 Length=3534686 Score = 347 bits (384), Expect = 1e-90 Identities = 1230/1890 (65%), Gaps = 59/1890 (3%) Strand=Plus/Minus Query 138151 GATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATT 138210 ||||| || || ||||||| || || | | || || || || | ||| || ||||| Sbjct 2154493 GATTTGTCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTACATG 2154434 Query 138211 CCCGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAG-TAACGCGTAAG 138268 ||||| || | ||||| |||| || |||| | || ||||| || || | || | ||| Sbjct 2154433 CCCGTCTTCAGGCCCATCTTCC-AGCCGTAGAAATGAATCGACGTCAGCTTAC-CATAAT 2154376 Query 138269 TCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAA 138328 |||| | |||| ||||| ||||| || ||| || ||||| || || ||||| Sbjct 2154375 TCGGCTCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGG 2154316 Query 138329 TGGCCATGTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAA 138388 ||||| || || | |||| || ||||| || |||||||| | || || | Sbjct 2154315 CCGCCATTTTGATACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGA 2154256 Query 138389 TATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTC 138448 | || |||| ||| | || || || ||| || ||| ||| | |||| ||| Sbjct 2154255 TGTGCTGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTTTT 2154196 Query 138449 TCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGA 138508 |||| ||||||| |||| || | ||| ||| | || || || || | || Sbjct 2154195 TCATTTCATCGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAGCAAATGATGATTGACGA 2154136 Query 138509 CCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 |||| || || || | || || || ||| ||| | ||| ||| | ||||| |||| Sbjct 2154135 CCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACG 2154076 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 | |||||||| |||| ||||| || |||| ||||||||||| |||| || ||| | Sbjct 2154075 ACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAGCG 2154016 Query 138629 AATTCCGTAAACCGTGAAGCTTG---ATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 | || || | || | ||||| || |||||| ||| ||||| ||||| | Sbjct 2154015 AGTTGCG---AACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACAGCT 2153959 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 || | || | ||||||||||| |||||||| | ||| ||| || | |||||||| | Sbjct 2153958 CGGTGGGGGTCTTGTTCCACATGTCGTACTGCAGCATCCCCTTGCTGACCGGACTGCCCT 2153899 Query 138746 CGTACGAATCGTATACACCAAACTCTTGC-GCCAACTCGTTGCTCGCCTCGAGCGCACCA 138804 |||||| ||||| || | | | || |||| ||| || ||||| | || || Sbjct 2153898 CGTACGTCTCGTACGTGCC-ATCGCGGGCGGCCAGCTCACAACTGGCCTCCAAAGCGCCG 2153840 Query 138805 TAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGC 138864 ||||| || |||||| || || || || ||| | ||||| | ||||||||||| Sbjct 2153839 TAGTAGATGGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCCTCTTCACTCTCGTACGGG 2153780 Query 138865 ATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGG 138924 ||| | || ||||||| ||||||| || |||||||| | |||| || | ||| Sbjct 2153779 TAGCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGTGG 2153720 Query 138925 CGCAGATTTGA-CGCTT---TTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTT 138980 |||| || || ||||| || |||| | || || ||||| | ||||||||||| Sbjct 2153719 CGCATGTTGGAGCGCTTCGCTTCCGGC----ACCGGGTAGTAGTTAATGTCGATGATTTT 2153664 Query 138981 GTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAA---TCGTTCAAAATCGTATGT 139037 ||| | || ||| ||| ||| | || | | || | ||| |||||||||| || Sbjct 2153663 GTTCAGGTTGCGCGTGACAGTCTT-GGCGACTTCCTTCAGTTTCG--CAAAATCGTACGT 2153607 Query 139038 GCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCA 139097 || ||| || | || || || |||| | || || || | ||||| Sbjct 2153606 ------GTGGTC-----CGGCTTC-ACGAACATGTTCAGCGCGATTGATGCCAGATTGCA 2153559 Query 139098 CACCGCCACTTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACT 139156 ||||| | ||| | | || || ||| ||||| ||||| | |||| || |||| Sbjct 2153558 GACCGCTATTTCATCCTTGGACG-AGTACTCGACGATTTCCGTGCACAGGTTTGAGCACT 2153500 Query 139157 TGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATAT 139216 |||| || || | || ||||| ||||| || || || || ||||| ||||| ||||| | Sbjct 2153499 TGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATCCTTGTACAGCATGT 2153440 Query 139217 ACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA 139276 |||| ||| || || || || | || || ||| ||| ||| ||| | | Sbjct 2153439 ACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCACAGATCCTGAGCCTTGA 2153380 Query 139277 TTTGACGCACGTAAA--GTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTC 139334 ||||| | |||| | | || |||||| | |||||| | || || || Sbjct 2153379 CCTGACGGA--TAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTC 2153322 Query 139335 ACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTT 139394 || | | || || || || |||| | || || ||||| | ||| | |||| Sbjct 2153321 TCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCAAGCTCCACATCTCGTT 2153262 Query 139395 CGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC 139454 ||||| ||||||| ||||||||||||||| | ||| | ||| | | || |||||||| Sbjct 2153261 CGCCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGC 2153202 Query 139455 CTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTG 139514 || ||| || |||| |||| | || || || || || || |||| Sbjct 2153201 GCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCGAACACATCGCCGTG 2153142 Query 139515 CCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTG 139571 ||| || || || ||||| || | || || || ||||| || || ||||| | Sbjct 2153141 CCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATA 2153082 Query 139572 TCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT 139631 || | | || ||| | ||||||| ||||||| |||| ||| | | ||||||| || Sbjct 2153081 GCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGT 2153022 Query 139632 GCTACGGATGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCG 139689 || ||| | || ||| | || |||| | || ||||| | ||| || || ||| Sbjct 2153021 GCCTGCGAT-GTAC-GTTCCCTTCGCACGGATGCAGTGGACATTCAAGCCAATGCCTCCG 2152964 Query 139690 CCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTC 139748 | | || || || | |||| | || | || || ||||| || || |||||||| Sbjct 2152963 GCCGACTTCGAAATCAGCGCGCACT-GCTTCAACGTGTCGTAAATGCCCTCGATGCTGTC 2152905 Query 139749 GTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAA 139808 |||| |||||| | ||||||||| || ||||| ||||| ||| || | || ||||| Sbjct 2152904 GTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCAGCCGCAAA 2152845 Query 139809 CAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGC 139868 || ||||| ||| ||||| || | | ||| | | | || || || ||||| Sbjct 2152844 CAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGATTATAGGTCTCTATGGC 2152785 Query 139869 GCTCA-CAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCC 139927 | || | |||||| ||||| || |||| | || |||||||||||||| || | Sbjct 2152784 -CGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCAGCATATGCTGCGGTC 2152726 Query 139928 GTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCC 139985 | || | | | ||||| ||| || ||| || ||||| || || || ||| |||| Sbjct 2152725 GCTCAACGATCTTGCCCTTGATCTTCAGCAGGTACGACCGT--TCCAGCGTTTTGAAGCC 2152668 Query 139986 AAAGTACCTATAGTTGAAATCGAGCGCATA 140015 ||| || | ||| ||||||| | |||| Sbjct 2152667 AAAATAATTGTAGCCGAAATCGCGATCATA 2152638 >seq1 Length=20238125 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || || || || || || ||||| || || || | | Sbjct 19807024 GATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACGCTTGAGGTCGAGCCGTC 19807083 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||| || || ||||| ||||| ||||| Sbjct 19807084 GGACACGATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGAATTCCTCCAGATCA 19807143 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| ||||||| ||||| |||||| |||||||| | | | || || || || Sbjct 19807144 ACAACGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGCACGCTATCCGACTACAA 19807203 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||| ||||||||||| | || || || Sbjct 19807204 TATTCAGAAGGAGTCTACGCTCCACCTGGTGTTGCGACTTCGTGGTGG 19807251 >seq8 Length=9380469 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || ||||| || ||||| || || || || || | Sbjct 4935972 GATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTC 4936031 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| ||||| || || || || || || || Sbjct 4936032 GGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 4936091 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || |||||||||||| | | | |||| || || || Sbjct 4936092 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTACAA 4936151 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||| ||||| ||||| || || ||||| |||| |||| || |||| Sbjct 4936152 CATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTGCGTGGTGGCG 4936201 >seq2 Length=16623535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || ||||| ||||| || | | ||||| | || | || || |||||||| ||| Sbjct 2043562 ATCACGCTGGAAGTCGAGCCGTCTGACACCATCGAGAACGTCAAGGCTAAGATCCAGGAC 2043621 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || || || || ||||| || ||||||||||| || || || ||||||||||| Sbjct 2043622 AAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAGGAC 2043681 Query 24860 TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 | | |||| || || ||||| || ||||| || || || |||||||| Sbjct 2043682 GGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGT 2043734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449889889879880