Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6 161 8e-35 seq24 87.8 1e-12 >seq6 Length=10405585 Score = 161 bits (178), Expect = 8e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| || | |||||||||||| || || ||||| || |||||||| ||||| || | Sbjct 329380 TTGTTGTCAAACTGCGTTTGCGCTCCAAGTTCGCAGCCAAAGTACTTCGTCGGATAGGTA 329439 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || ||||| || | || |||| | |||| |||||| ||||| || |||||||||||| Sbjct 329440 GCAGGACGGCCGATAGCTCTGGCCACATCGGCCATGTTCACGATAACCGTCTTGATGCCG 329499 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 ||||| || || || ||||| ||| |||||| ||||| ||||| |||||||| ||| Sbjct 329500 TTGCCTTTACCCTCCACCTTCGCGTTGATGCGAGGCATCTTGTAACGGTAGAAGATGTCG 329559 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | |||||||| || ||||| ||||| |||| Sbjct 329560 GTGACATTGCGATTCACGTTAACAGTAGCCAT 329591 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 |||||| || || | ||||| ||||| | ||| || || | |||| ||||| || Sbjct 329089 CGGCGGATTCTTGATGATGAACGTGTTCACCTTGTGGTTGACCTCAAGCGGACCGTGGTA 329148 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 || || || ||||||||||| ||| || ||| || | || || | || || || Sbjct 329149 TCCACAGGCCTTGCAGCCCTGCGCGATGGTGCCCTTCTTCGACGAGACCAGCAGATCGGT 329208 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 ||||| ||||| || || || |||| || ||||||| ||||| ||||| || || || Sbjct 329209 TTCCGGATTGTCGCACTCAGGGCACAGTACGTACTTGCGAATGAACCCATCGAGTAGATC 329268 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGA 34441 ||| | ||| | ||| || || || || |||||||| |||||||| | | || ||| Sbjct 329269 CTGCAGCTTGGTCGCGTCATGCGATCCATTCACGATGAAACGTTCGTTCTGGAAAACGA 329327 >seq24 Length=2366404 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 103738 CGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAAGTCAAATGCTTTTACTGCAACGG 103797 ||| || || ||||| ||||||||||| |||||| ||||| ||||| ||| ||| Sbjct 1871466 CGATGCCGGCTTCTTCTACACCGGCAAGAGCGACCGGGTCAAGTGCTTCAGCTGTGGCGG 1871407 Query 103798 CGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGGCAACAACACGCGCTTTGGT 103853 |||||||| | |||||||| || || || ||||||||||| || ||| | |||| Sbjct 1871406 TGGTCTGAAGGACTGGGAGCAGGACGATGAGCCGTGGCAACAGCATGCGATCTGGT 1871351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412834701803903