Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq20 174 2e-37 seq705 159 5e-33 seq19 140 5e-27 seq4 120 5e-21 seq10 116 6e-20 seq8 98.7 2e-14 seq3 95.1 2e-13 >seq20 Length=4192108 Score = 174 bits (192), Expect = 2e-37 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1465891 TGTACTTGGTCACCGCCTTCGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1465950 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || |||||||||||||||||||||| | || ||| ||||||||| Sbjct 1465951 GCAGCAACCGGACGGCGGTCTGGATCTCGCGGGAGGTAATGGTGGAGCGCTTGTTGTAAT 1466010 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| ||||||| |||| || |||| ||||||||||| || ||||| Sbjct 1466011 GTGCCAGCCGGGACGCCTCGGCCGCGATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 1466070 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || |||||||| ||| ||||| |||||||| |||||||||| Sbjct 1466071 TGATGCTCATCGCCTTCGACGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 1466130 Query 1485710 A 1485710 | Sbjct 1466131 A 1466131 >seq705 Length=18649 Score = 159 bits (176), Expect = 5e-33 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || ||||| ||| |||||| || || | | Sbjct 16024 TGTACTTGGTGACGGCCTTCGTTCCCTCGGAAACGGCATGCTTGGCCAACTCACCAGGTA 16083 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| |||||||| ||||| | |||||| |||||||| | Sbjct 16084 GCAGCAGACGGACGGCAGTCTGGATTTCGCGCGACGTGATCGTCGAACGCTTGTTGTAGT 16143 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| ||| |||| | ||||||| |||| |||||||| || || ||||| Sbjct 16144 GCGCCAGCCGGGAGGCTTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAAACTGTTCA 16203 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| || |||||| ||| || ||||| ||||| |||||||||| Sbjct 16204 TGATGCTCATCGCCTTGGACGATATGCCCGTGTCCGGATGCACTTGCTTCAGCACCTTGT 16263 Query 1485710 A 1485710 | Sbjct 16264 A 16264 Score = 113 bits (124), Expect = 7e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1485534 CAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGC 1485593 ||| || ||||| |||||||| ||||| | |||||| |||||||| | |||| Sbjct 15482 CAGACGAACGGCAGTCTGGATTTCGCGCGACGTGATCGTCGAACGCTTGTTGTAGTGCGC 15541 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 ||| ||| ||| |||| | ||||||| |||| |||||||| || || ||||||||| Sbjct 15542 CAGCCGGGAGGCTTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAAACTGTTCATGAT 15601 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||| ||| || |||||| ||| || ||||| ||||| ||||||||||| Sbjct 15602 GCTCATCGCCTTGGACGATATGCCCGTGTCCGGATGCACTTGCTTCAGCACCTTGTA 15658 >seq19 Length=3534686 Score = 140 bits (154), Expect = 5e-27 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||||||||||||||| |||| ||| ||||||| ||||| ||||| || ||||| Sbjct 2153096 GCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTT 2153037 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||| ||||| || | ||| | ||| || || | ||| | || Sbjct 2153036 GGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTCAA 2152977 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| ||||| ||||||| ||| || || |||||||||| |||| ||| ||||| ||||| Sbjct 2152976 GCCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGCC 2152917 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 |||||| |||| || ||| || ||||||||| || || Sbjct 2152916 CTCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGA 2152875 Score = 104 bits (114), Expect = 4e-16 Identities = 122/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 2071852 ACGCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGT 2071909 ||||| |||| ||||| || |||| ||| ||| |||| || | |||||||| ||| Sbjct 2153254 ACGCGCTGCATGAACAGATCCGGCAC--CCAGAGGGCGTAGAACATGTCGCGCGCGCGGA 2153197 Query 2071910 TCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACG 2071969 ||||||||||||| |||||| ||||| ||||| | |||| | ||| ||||||||| Sbjct 2153196 CCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCGAACACATCGCCGTGCCACG 2153137 Query 2071970 GCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||| |||||| || || || || ||||||| |||||| Sbjct 2153136 GCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCC 2153094 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 ||||| ||||||| |||||||||||||| || ||||||| |||||||| ||| ||| || Sbjct 2153764 AACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGC 2153705 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 || || ||||||||||||| ||| |||||||| | ||| |||||| Sbjct 2153704 TTCGCTTCCGGCACCGGGTAGTAGTTAATGTCGATGATTTTGTTCAGGTTG 2153654 Score = 87.8 bits (96), Expect = 3e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 2071567 GACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGC 2071626 ||||| ||| ||||| || ||||||||||| | || | | ||||||| |||||| Sbjct 2153539 GACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGT 2153480 Query 2071627 TGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATC 2071686 |||||||| | | ||| || ||||||| ||||||||| || | |||||||||| | Sbjct 2153479 TGGTTGCTCTTGCGATTGCACGCATCCTTGTACAGCATGTACGGGACGCCCGTCTCGACC 2153420 Query 2071687 TGCGCCGTGACGATGGCCGACCA 2071709 |||| || |||||| |||| Sbjct 2153419 TGCGATTCGATGATGGCAAACCA 2153397 >seq4 Length=12071184 Score = 120 bits (132), Expect = 5e-21 Identities = 241/348 (69%), Gaps = 11/348 (3%) Strand=Plus/Minus Query 653528 AAGCGCGACAAGTCGACCATCCTGCGCACCAACGAGGCCGCCACGGTGCACCGCGTCGTG 653587 ||||| ||| ||| || ||||||||| | ||| ||| | || ||| || || Sbjct 2921351 AAGCGAGACGGGTCCACGTTCCTGCGCAACTCCGAAACCGGTATCGTCGACCAGGTGATG 2921292 Query 653588 GTGACGCGCAACGGCGACGGCGCCAACGCGGTCAAGATCGTCACCCGCG--CCATGCGCC 653645 |||||| |||| |||| ||| ||| |||||| || | ||| | ||||| Sbjct 2921291 CTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGAT--TCGCGTGCGGTCGGTGCGC- 2921235 Query 653646 AGCCCG-AGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAGC 653704 | |||| || | |||||||| | | || |||||||| || ||||| ||| |||| | Sbjct 2921234 ATCCCGCAGATCGGCGACAAGTTTGCATCCCGCCACGGTCAGAAGGGTACCTGCGGCATC 2921175 Query 653705 GTGCGCTCGACCG-AGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGT 653763 | | || | | |||| ||||||| || || ||| |||| |||||| || ||| | Sbjct 2921174 CAGTAC-CGCCAGGAGGACATGCCGT--TCACCT-GCGAGGGCATCACGCCAGATATCAT 2921119 Query 653764 CATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCT 653823 ||||||||||||||||||||||||||| ||||| || ||| | |||| ||| | ||| Sbjct 2921118 CATCAACCCGCACGCCATCCCGTCGCGTATGACGATCGGCCATTTGATCGAGTGCATCCA 2921059 Query 653824 GGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTT 653871 ||||||| | | || | ||||| | | || |||| || ||||| Sbjct 2921058 GGGCAAGCTCGGCTCGAACAAGGGCGAAATCGGTGACGCGACGCCGTT 2921011 >seq10 Length=7496699 Score = 116 bits (128), Expect = 6e-20 Identities = 138/182 (76%), Gaps = 9/182 (5%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA-AA 794438 || ||||| ||||| |||||||| ||||| || ||||| ||| || |||| ||| || Sbjct 495585 CCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCT-CCCGCTAAAGAA 495643 Query 794439 GATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT- 794497 ||||||||||||||||||||| | || | |||||| || ||||| |||| |||| Sbjct 495644 GATGCCCTCGACGGCGGCAAACGCAACCACCCGCTC-GCCAAAGT----TGGCCTTCTTG 495698 Query 794498 -TGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | |||||| |||| |||||| || ||||| ||| |||| | |||| || |||||| Sbjct 495699 CTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGTGTTTCGATG 495758 Query 794557 GC 794558 || Sbjct 495759 GC 495760 Score = 93.3 bits (102), Expect = 7e-13 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || |||| ||| || ||||||| |||| || || |||| ||||| ||||||||| Sbjct 495956 GCTTCGGTTACCTGCACCTCCTGGCTGAACCGTTCGACCAGATTCTCGTTAACGATGCCG 496015 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTC-GTCGTCGCTGAG 796268 || ||||||||||| ||||| |||||| ||| || |||||||| ||| | | || Sbjct 496016 TCCGACGCGGCGAAAAATGCGAGCACGTGCGAGATGAAATGACGCTCACTCGGC-TTCAG 496074 Query 796269 CGAGACCCAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 || |||| | | ||| | || | |||||||||||||| ||||||| || || | Sbjct 496075 CGCCTCCCAATCTTTCATGTCCTTCGAC-AGGTCGACCTCCTCCACGGTCCAGAACGATG 496133 Query 796328 CCTCGGCCT 796336 | ||||||| Sbjct 496134 CTTCGGCCT 496142 >seq8 Length=9380469 Score = 98.7 bits (108), Expect = 2e-14 Identities = 167/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 429510 CTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAAC 429569 |||||| ||| | | || |||||||| |||||| || ||| | || || | ||| Sbjct 7673673 CTCCAGTGCGGCTACAAGGTGGAGCGCCATCTGCGCGACGACGATCTTGTCATCTTCAAC 7673732 Query 429570 CGGCAGCCGTCGCTCCACATG--GGGTC-GATGCTCAACCACAAGGTGGTGCCCATGCCC 429626 ||||||||| |||| |||| | | || |||| | | | | | ||||| |||| Sbjct 7673733 CGGCAGCCGACGCTGCACAAGATGAGTATGATGGGCCATCGCGTGAAGGTGC---TGCCG 7673789 Query 429627 -GGTCGCACCTTCCGGCTCAACCTG-GCCGTGACGGGCACCTACAACGCCGACTTTGACG 429684 ||||| || |||||| | ||||| || || | || | ||||||||||| || || | Sbjct 7673790 TGGTCG-ACGTTCCGGATGAACCTCAGCTGTACCTCGC-CGTACAACGCCGATTTCGATG 7673847 Query 429685 GCGACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCG 429738 ||||||||||||| ||||||||||| |||||| | | | ||||| ||| ||| Sbjct 7673848 GCGACGAGATGAATCTGCACGTGCCGCAGTCGATGGAGACGCGCGCGGAAATCG 7673901 Score = 89.7 bits (98), Expect = 8e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 431094 ATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATC 431153 || || || ||||||||| | |||| || ||||||||||||||||| || || |||||| Sbjct 7674952 ATGGGTGGTCGCGAGGGTTTGATCGATACCGCCGTCAAGACGGCCGAAACCGGTTACATC 7675011 Query 431154 CAGCGTCGGTGCATCAAATCGATGGAG 431180 |||||||| ||||||| |||||||| Sbjct 7675012 CAGCGTCGTCTCATCAAAGCGATGGAG 7675038 >seq3 Length=13649947 Score = 95.1 bits (104), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 |||||||||||| | | |||||||| || || ||| || | || | ||||||||| Sbjct 12269660 GGCCGCCACAAGATCGTTATCCTCGACGAAGCGGACAGCATGACCGAAGGAGCCCAGCAG 12269719 Query 2019264 GCCCTCCGATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAA 2019322 || ||||| ||| || ||||||| |||| |||||| || || || || |||||||| || Sbjct 12269720 GCTCTCCG-TCGTACGATGGAAATCTACAGCAACACTACCCGTTTCGCCCTGGCCTGTAA 12269778 Query 2019323 CACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCG 2019382 ||| || | |||||||| | ||||| || || || || | |||||| | Sbjct 12269779 CACCAGTGAGAAGATCATCGAACCTATCCAGTCACGCTGTGCGATGCTACGCTTTTCAAA 12269838 Query 2019383 CCTCACCGACGCCCAG 2019398 ||| ||||||| ||| Sbjct 12269839 ACTCTCCGACGCGCAG 12269854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916100560476869