Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 131 3e-25 seq3 114 3e-20 >seq1 Length=20238125 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || | ||| || ||||| || ||||| ||||| || || ||||| | | || Sbjct 19807239 CGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGGCCA 19807180 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | ||||| || || ||||| || | ||||||||||||||| ||||| |||||| Sbjct 19807179 TCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCCTTA 19807120 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || ||||| || ||||| || || || || || | || || Sbjct 19807119 TCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTGATG 19807060 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || ||||| |||||||| Sbjct 19807059 GTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 19807025 >seq3 Length=13649947 Score = 114 bits (126), Expect = 3e-20 Identities = 307/461 (67%), Gaps = 10/461 (2%) Strand=Plus/Minus Query 198183 GAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCTACTCAC 198242 || |||||||| || ||||| | ||| |||||| | ||||| | | ||| || || Sbjct 8055240 GAGCTGTCGGACAACTTTTGCTTCTACAATAAAAACTACGACAATCTGCAGGGCGCTTAC 8055181 Query 198243 GCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATAT--CTATT 198300 | ||||| | | ||| | || || ||| || || | || || || ||| | Sbjct 8055180 GATTGGGCGCGCAAAACGCTGGACGACCACCGAAAGGA--CAAGCGCGTCTACTGCTACT 8055123 Query 198301 CTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATAC 198360 | | | | || |||| ||| | || || ||| || ||||| | | || | | Sbjct 8055122 CCCGTGAGGAGCTGGAAACGGCAAAGACGCACGACGACCTGTGGAACTCGGCCCAGCTGC 8055063 Query 198361 AGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATAC 198420 ||||| | | || || || ||||| |||| | | ||||||||||| || ||||||| Sbjct 8055062 AGATGGTGAAGGAGGGCAAGATGCACGGTTTCCTGCGCATGTACTGGGCGAAGAAGATAC 8055003 Query 198421 TTGAATGGACAAGAACACCGGAAGACGCTTT-GAGTTATAGTA-TCTATCTAAACAATAA 198478 | || ||||| | ||| || || || || | ||| | | | ||||||| ||| | Sbjct 8055002 TCGAGTGGACCAAAACTCCCGAGGAAGCGCTCGAG--ACGGCAATCTATCTCAACGACCG 8054945 Query 198479 GTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCG 198537 |||| || || || ||| || || ||||||||||| ||||| |||||||| || || Sbjct 8054944 GTACAGCCTGGATGG-ACGCGACCCGAACGGATACGTCGGTTGCATGTGGTCGATCGCCG 8054886 Query 198538 GATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATT 198597 | | || |||| | ||||| || ||| || || || || |||||||| ||||| | Sbjct 8054885 GCATTCACGATCAGGGCTGGAAGGAGAGAGAAATCTTCGGTAAAATAAGATACATGAACT 8054826 Query 198598 ATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATTTATA 198638 | || || | |||| ||| ||| | ||| ||||||| || Sbjct 8054825 ACGAAGGATGTAAGCGAAAGTTTAACGTTAATGCATTTGTA 8054785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981809953284769