Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19 551 5e-152 seq10 167 2e-36 seq8 129 6e-25 seq1 98.7 1e-15 >seq19 Length=3534686 Score = 551 bits (610), Expect = 5e-152 Identities = 1239/1835 (68%), Gaps = 45/1835 (2%) Strand=Plus/Minus Query 147943 CGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGT 148002 ||| ||| |||||||| ||||||||||||||||| |||||||| ||| ||||| | Sbjct 2154458 CGGCTTG-GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAAT 2154400 Query 148003 GCACCGACGACA--TGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCT 148060 | | ||||| || | | | | | |||| | | ||| | || |||||||| Sbjct 2154399 GAATCGACGTCAGCTTACCAT--AATTCGGCTCGGCCACGTGAATGTTGAACGACTGCGA 2154342 Query 148061 CTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTT-ATCTTCATCT 148119 ||||||||||||||| ||||| || || ||||||| || | || ||| | | || | Sbjct 2154341 CTGGTCAATGAACGCCCCACGATCGGCCGCCATTTTGAT-ACACGTTTTCACCGAAATTT 2154283 Query 148120 CCCAGGCCGTCTTGTACA-GCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 |||| |||||||||||| | ||| ||| || | ||||| | ||||| ||| | Sbjct 2154282 CCCAAACCGTCTTGTACAAGTCGCG-GATGTGCTGCGGAATTTCCTCGATCTTCTGGATG 2154224 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 || || |||||| | || | || |||||| || | ||| | || || Sbjct 2154223 GAACCATTGTGCGCGAGGATGTTGTTTTTCATTTCATCGTCCCACAGGCCTAAATCCGTC 2154164 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 ||||| | | || || ||||| || ||||| |||||||| | ||||| ||||| Sbjct 2154163 AGGTCCTGTAGCAAATGATGATTGACGACCTGGAACTCGCCCGACAGCACACGCCGATTG 2154104 Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358 || ||||| || |||| || |||||||||||||||||||| ||||||||||| | Sbjct 2154103 TAGACGTTCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAA 2154044 Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418 || || ||||| || | ||| ||||||||||| | || | || || || | Sbjct 2154043 GCGGTCGGCATCGGAGCCAACAGAAGCGAGTTGCGAACGCCATGCTTGGCAATCTTTTCC 2153984 Query 148419 TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGA 148478 ||||| | |||||| ||| ||| | || ||| ||||||||||||||||||||| Sbjct 2153983 TTCAGCACACCCCAGTTCCACAGCTCGGTGGGGGTCTTGTTCCACATGTCGTACTGCAGC 2153924 Query 148479 ATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG-CCAG 148537 || || ||| | || ||||||||||||| ||||| || | ||| | || |||| Sbjct 2153923 ATCCCCTTGCTGACCGGACTGCCCTCGTACGTCTCGTACGTGCCAT-CGCGGGCGGCCAG 2153865 Query 148538 TTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAG 148597 || || || ||||| | ||||||||||| || || ||| ||||| ||| ||| Sbjct 2153864 CTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCAGCTT 2153805 Query 148598 CGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTG 148657 | |||| || || |||||||| |||| | | | ||||| ||||| | |||||| Sbjct 2153804 CTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATGCCCTG 2153745 Query 148658 TACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC-GCGCTCTCG--AGCGG 148714 ||||| | || || |||| ||| |||||||| |||| |||| || | ||| Sbjct 2153744 CACGCCGATACCGATCGGCCTGTGGCGCATGTTGGA---GCGCTTCGCTTCCGGCACCGG 2153688 Query 148715 ATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCG 148774 |||| ||| ||||||||| |||| || |||||| || ||| | | || | Sbjct 2153687 GTAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGA--CTTC- 2153631 Query 148775 CAGCAATT---CAAAATCGTACTTGTCATC------TACGATGCATCGGTTCACGGCGAT 148825 | || || ||||||||||| ||| || |||| ||| ||||| ||||| Sbjct 2153630 CTTCAGTTTCGCAAAATCGTACGTGTGGTCCGGCTTCACGA-ACAT--GTTCAGCGCGAT 2153574 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 || || |||||||| || || | |||||| || |||||| ||||| || | ||| Sbjct 2153573 TGATGCCAGATTGCAGACCGCTATTTCATCCTTGGACGAGTACTCGACGATTTCCGTGCA 2153514 Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945 ||| || ||| ||||| ||||||||||| ||| |||||||||| |||||||| || Sbjct 2153513 CAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATC 2153454 Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGC 149003 |||||||||||||||||| |||| || || ||||||| ||| | ||| || | | | Sbjct 2153453 CTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCA--C 2153396 Query 149004 AGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGC 149063 || ||||| || || || | | || ||||||| |||||| || || ||| Sbjct 2153395 AGATCCTGAGCCTTGACCTGACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGAGC 2153336 Query 149064 CGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGC 149123 || ||| |||| || | |||| || ||||| || | |||||||||||| | Sbjct 2153335 TTTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCAAG 2153276 Query 149124 GACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTAC 149183 ||||| ||| ||| | ||||||| ||| |||||||| ||||||||||| ||||| Sbjct 2153275 CTCCACATCTCGTTCGCCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAG 2153216 Query 149184 ATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243 | | ||||||||| | || || ||| |||| ||| | ||| | | Sbjct 2153215 AACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCG 2153156 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCG 149300 || | || ||||||||||||| | ||| | ||||| ||| || |||| |||||| Sbjct 2153155 AACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCG 2153096 Query 149301 CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG 149360 ||||||||||| | |||| | ||||||| | || || | ||| || | | || || Sbjct 2153095 CCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTG 2153036 Query 149361 GCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACG 149420 | | | ||||| || ||| | || ||| || | ||| || || | | Sbjct 2153035 GAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTCAAG 2152976 Query 149421 CCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCC 149480 || ||||| ||| | |||| || || |||||| | | ||| ||| |||||| Sbjct 2152975 CCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGCCC 2152916 Query 149481 TCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTG 149540 |||||||||||| | ||| |||||||||||||| || | | |||||| | || Sbjct 2152915 TCGATGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTTGTGTC 2152856 Query 149541 CCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTAC 149600 | ||||| |||| || || || || ||||| || || | | | || Sbjct 2152855 GCAGCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGATTATAG 2152796 Query 149601 GACTCGA-GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 | ||| | | ||| || || || ||||| || ||||| ||||| |||||||||||||| Sbjct 2152795 GTCTCTATGGCCGC-ATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCAGCAT 2152737 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTA--GCCGTTTTCTAGT 149717 ||||||||||||||| | | ||| || || |||| ||| ||| ||| || Sbjct 2152736 ATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAGCAGGTACGACCG--TTCCAGC 2152679 Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 || ||| ||||||| || |||||| | || ||||| Sbjct 2152678 GTTTTGAAGCCAAAATAATTGTAGCCGAAATCGCG 2152644 >seq10 Length=7496699 Score = 167 bits (184), Expect = 2e-36 Identities = 285/413 (69%), Gaps = 3/413 (1%) Strand=Plus/Plus Query 120453 GCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGC 120512 |||||||| || ||||| || || || || ||||| ||||||| |||| | Sbjct 495338 GCCCAACTCCACCAGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACA 495397 Query 120513 GTTCATGCCCAGCAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCAC 120572 |||||| || |||| | ||||| | |||| ||||| ||||||| ||| || ||| Sbjct 495398 GTTCATACCGAGCATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCAC 495457 Query 120573 CGCCTCCTTGAACATGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG 120632 ||| || || ||| | || | | || | | ||| || | | | | | Sbjct 495458 CGCATCGCGGATGATGCTGGTCACACGTTCGCGCGTCGGCTTCTGCACCAGGTACTT--- 495514 Query 120633 GTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCT 120692 | | ||| || |||||||| ||||||||||||||||||||| ||||||||||| Sbjct 495515 GAACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTCGA 495574 Query 120693 AAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCC 120752 || |||| || ||||| | ||| | |||| | |||| |||||||| ||||| || Sbjct 495575 GAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTCCC 495634 Query 120753 CGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGT 120812 |||||| | |||||| ||| |||||| || |||| |||||| | || | ||| | Sbjct 495635 GCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTGGCCTT 495694 Query 120813 CTTGCTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||||| |||||| |||| ||||| |||||||| || ||||||||||| Sbjct 495695 CTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCA 495747 >seq8 Length=9380469 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || ||||| ||| || |||| | ||||| ||||| Sbjct 4936176 ATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGCCCATCCTCCAGCTG 4936117 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || || ||||||||||| || || ||||| |||||||| |||||| Sbjct 4936116 CTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 4936057 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||| || | |||||| || || | ||| | ||| || || || Sbjct 4936056 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGT 4935997 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| |||||||| Sbjct 4935996 GAGGGTTTTGACGAAGATCTGCAT 4935973 >seq1 Length=20238125 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| ||| | |||| | | | ||||| | ||| ||||| Sbjct 19807221 GTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGGCCA-TCCTCCAACTGTTTGCC 19807163 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || || || || ||||| || || ||||| || |||||| ||| Sbjct 19807162 GGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCCTTATCTTGGATCTTGGCCTT 19807103 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | |||||| | ||||| || || | |||| ||| || || || || || Sbjct 19807102 CACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTGATGGTCTTCCCAGTGAGGGT 19807043 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || ||||||||||| Sbjct 19807042 TTTCACAAAAATCTGCAT 19807025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412515376040