Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 105 2e-17 seq8 84.2 5e-11 >seq1 Length=20238125 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || ||||| | || || || || ||| Sbjct 19807028 CAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACGCTTGAGGTCGAGCCGTCGGAC 19807087 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || || |||||| || || ||| Sbjct 19807088 ACGATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGAATTCCTCCAGATCAACAA 19807147 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || |||||||| ||||| | || | |||| ||||| | Sbjct 19807148 CGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGCACGCTATCCGACTACAATATT 19807207 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| |||||||| || ||||| || ||| ||||||| Sbjct 19807208 CAGAAGGAGTCTACGCTCCACCTGGTGTTGCGACTTCG 19807245 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| ||| || ||||| || |||||||| ||||| | ||| ||||| | | || Sbjct 19807245 CGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTG 19807186 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| |||| ||| || ||||||||||| || ||||||||| Sbjct 19807185 CGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGA 19807141 >seq8 Length=9380469 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || || || | || || || || || Sbjct 4935976 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 4936035 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| ||||||| || Sbjct 4936036 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAGCAG 4936095 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || || |||| |||||| | Sbjct 4936096 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTACAACATT 4936155 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 4936156 CAGAAGGAGTCGACCCTCCATCTGGT 4936181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181800040209691