Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq19 452 4e-122 seq10 102 8e-17 seq8 98.7 9e-16 seq1 91.5 1e-13 >seq19 Length=3534686 Score = 452 bits (500), Expect = 4e-122 Identities = 1226/1851 (66%), Gaps = 38/1851 (2%) Strand=Plus/Minus Query 146575 GCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATT 146633 || || || ||||||| || ||||||||||| || ||||| |||| ||| || Sbjct 2154460 GCCGGCTTGGTGCGCAGGTAGTACATGCCCGTCTTCAGGCC-CATCTTCCAGCCGTAGAA 2154402 Query 146634 GTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCT 146693 |||||||| |||| | | || ||||||| |||||| || || ||||| || Sbjct 2154401 ATGAATCGACGTCAGCTTACCATAATTCGGCTCGGCCACGTGAATGTTGAACGACTGCGA 2154342 Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCA-TTT 146752 || || ||||| || || ||||||||||| | || | |||||| | | ||| Sbjct 2154341 CTGGTCAATGAACGCCCCACGATCGGCCGCCATTTTGAT-ACACGTTTTCACCGAAATTT 2154283 Query 146753 CCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAG 146812 ||||| | || ||||||| | | | | ||||| | || || || || || | Sbjct 2154282 CCCAAACCGTCTTGTACAAGTCGCGGATGTGCTGCGGAATTTCCTCGATCTTCTGGATGG 2154223 Query 146813 AGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAA-AGGTTTAGTTTAATG 146871 | || |||||||| | || ||||| ||||| ||| | ||| || | | Sbjct 2154222 AACCATTGTGCGCGAGGATGTTGTTTTTCATTTCAT-CGTCCCACAGGCCTAAATCCGTC 2154164 Query 146872 AGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA 146931 ||||| | | |||| |||||||| || || |||||||||| ||||||||| | Sbjct 2154163 AGGTCCTGTAGCAAATGATGATTGACGACCTGGAACTCGCCCGACAGCACACGCCGATTG 2154104 Query 146932 TACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTT 146991 || || || |||| | ||||| || ||||| || ||||| || || || || |||| Sbjct 2154103 TAGACGTTCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAA 2154044 Query 146992 GCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGG--ATGTTGT 147049 ||||| ||||| |||| || | || || || | || | || || || || | Sbjct 2154043 GCGGTCGGCATCGGAGCCAACAGAAGCGAGTTGCGAACGCCAT--GCTTGGCAATCTTTT 2153986 Query 147050 CCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGA 147109 |||||| ||||| ||||| | | ||| ||| |||||||||||||||||| | Sbjct 2153985 CCTTCAGCACACCCCAGTTCCACAGCTCGGTGGGGGTCTTGTTCCACATGTCGTACTGCA 2153926 Query 147110 GCA-CTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCC 147168 ||| | ||| | ||| | |||||||| || |||| ||| | || ||||| ||| Sbjct 2153925 GCATCCCCTTG-CTGACCGGACTGCCCTCGTACGTCTCGTACGTGCCATCGCGGGCGGCC 2153867 Query 147169 AATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG 147228 | ||||| || ||||| | || || ||||| ||||||||| |||||||| ||| || Sbjct 2153866 AGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCAGC 2153807 Query 147229 ACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCC 147288 ||| ||||| |||||||| || |||| || | || |||||||||| ||| Sbjct 2153806 TTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATGCCC 2153747 Query 147289 TGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGA 147348 || | |||| ||||| || | || |||| ||||||||| || | || Sbjct 2153746 TGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCACCGGG 2153687 Query 147349 TAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG 147408 |||| ||| || || || ||||| ||||| ||| ||| || | | | || Sbjct 2153686 TAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGACTTCCTTC 2153627 Query 147409 AGTTTCTCGAAATCATAAGT----CCCGTCTTCGACACGTACGCATTGGTTCACGGCGAT 147464 |||||| | ||||| || || ||| ||| |||| | ||| ||||| ||||| Sbjct 2153626 AGTTTCGCAAAATCGTACGTGTGGTCCGGCTT---CACGAA--CAT--GTTCAGCGCGAT 2153574 Query 147465 AGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 || |||||||||||||| || | || || | ||||| |||||||| | ||| Sbjct 2153573 TGATGCCAGATTGCAGACCGCTATTTCATCCTTGGACGAGTACTCGACGATTTCCGTGCA 2153514 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 |||||| ||| || || |||| || || || ||||| || ||||||||||| || Sbjct 2153513 CAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATC 2153454 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATG 147641 ||| | ||||||||||| |||| |||||||| |||| ||| | ||| ||||| Sbjct 2153453 CTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACC---A 2153397 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 ||| ||||| || ||| | | | | |||||||| || ||||| | ||| | Sbjct 2153396 CAGATCCTGAGCCTTGACCTGACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAGAG 2153337 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 | |||||||| || || | |||| | || |||||||| | ||||| ||||||| Sbjct 2153336 CTTTTCAAACTCCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCAA 2153277 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 |||||| |||| ||| | ||||| |||| ||||||||||||||||| || ||||| Sbjct 2153276 GCTCCACATCTCGTTCGCCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTA 2153217 Query 147822 CATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAG-CACGC 147880 | | |||||||| | ||||| ||| |||| |||| || || || | Sbjct 2153216 GAACATGTCGCGCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTC 2153157 Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTC 147937 | | | ||| ||||||| || || | ||||| || | |||||| ||| || | Sbjct 2153156 GA-ACACATCGCCGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGC 2153098 Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997 ||||||||||||||| |||| | ||||||| | ||||||| ||| || |||| ||| Sbjct 2153097 CGCCCTGGTCGACATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGT 2153038 Query 147998 TCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAA 148057 | | | | ||||| ||| ||| | | || || || | ||| || || | Sbjct 2153037 TGGAAATTCCGTTCGTGCCTGCGATGTACGTTCCCTTCGCACGGATGCAGTGGACATTCA 2152978 Query 148058 CGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGC 148117 ||||||||| ||| | |||| || || ||||| | ||| || ||| |||| Sbjct 2152977 AGCCAATGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGC 2152918 Query 148118 CGTCGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176 | ||||||||||||| | || | |||| ||| || ||| | | |||||| | Sbjct 2152917 CCTCGATGCTGTCGTCCGACATCGTC-AGCAGAAAGCAGGAAGAAAGCTGCGGACGTTGT 2152859 Query 148177 GTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGA 148236 || | |||| || | || || ||| |||||||| | | | | | Sbjct 2152858 GTCGCAGCCGCAAACAATGTAGGCGACGCATGCGTAAAGTAACGCTCCGAGAGTAGATTA 2152799 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 || ||||| || || | ||||| || |||||||||||||| | || |||||||| ||| Sbjct 2152798 TAGGTCTCTATGGCCGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCATCAGC 2152739 Query 148297 ATGTGCTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAG 148355 || ||||| ||||| || | | |||| |||||||| || || || ||| || Sbjct 2152738 ATATGCTGCGGTCGCTCAACGATCTTG-CCCTTGATCTTCAGCAGGTACGACCGTTCCAG 2152680 Query 148356 GGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 |||||| | ||||| || ||||| | ||||| | || || |||||| Sbjct 2152679 CGTTTTGAAGCCAAAATAATTGTAGCCGAAATCGCGATCATATATGATGGC 2152629 >seq10 Length=7496699 Score = 102 bits (112), Expect = 8e-17 Identities = 170/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 46743 AATGCGTTCGAG-CACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGAT 46801 ||||| |||| ||| |||| ||||| || |||||| | ||||| |||| ||||| Sbjct 495763 AATGCCATCGAAACAC-TGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGGAT 495705 Query 46802 CGAGAGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGT 46861 | |||| ||| |||| | | |||||| |||| || || || ||||| ||| | Sbjct 495704 CTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTGGTTGCGTTTGCCGCCGTCGAGGGCAT 495645 Query 46862 GtttttttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGG 46921 || ||| || || || ||||||||||| | | || | ||| | |||||||| Sbjct 495644 CTTCTTTAGCGGGAGCTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTGATGCCGGG 495585 Query 46922 CCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTG 46981 |||| ||| |||||| |||| ||||||||||| || || ||| |||||||| || Sbjct 495584 TTTGACCTTCTCGAACGAGCTGATTTCGCGCGACGAGGGCCTGCACTGCGACTTTGCCTG 495525 Query 46982 TCT 46984 ||| Sbjct 495524 TCT 495522 >seq8 Length=9380469 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| ||| | | | ||||| || ||||||||||||||| || || Sbjct 4936194 ACGCAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGT 4936135 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 4936134 GCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCC 4936075 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 4936074 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAG 4936015 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||| |||||||| Sbjct 4936014 GGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4935973 >seq1 Length=20238125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | | ||||| || ||||| ||||||||| | || || | Sbjct 19807239 CGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGGCCA 19807180 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | |||||| |||| |||| ||||| |||||||||||||| || || || ||| Sbjct 19807179 TCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCCTTA 19807120 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | |||||| || || | ||| | Sbjct 19807119 TCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTGATG 19807060 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | ||||||||||| Sbjct 19807059 GTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 19807025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603032075560