Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq20 141 1e-27 seq10 138 2e-26 seq19 134 2e-25 seq705 123 4e-22 seq3 118 2e-20 seq4 107 3e-17 >seq20 Length=4192108 Score = 141 bits (156), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| |||| |||| || ||| | Sbjct 1466134 ATCTACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCGTCGAAGGCG 1466081 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| |||| || |||| ||||||| Sbjct 1466080 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTCGAGCGGATCGCGGCCGAGGCGTCC 1466021 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | |||||||||| ||| || | | |||||||||||||||||||| Sbjct 1466020 CGGCTGGCACATTACAACAAGCGCTCCACCATTACCTCCCGCGAGATCCAGACCGCCGTC 1465961 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| |||||| ||||||| ||||||||| ||||||||||| Sbjct 1465960 CGGTTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 1465911 >seq10 Length=7496699 Score = 138 bits (152), Expect = 2e-26 Identities = 196/269 (73%), Gaps = 5/269 (2%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTCCAC 1455854 ||||||| || || || ||||||| |||||||||||||| | || | ||| | | Sbjct 496142 AGGCCGAAGCATCGTTCTGGACCGTGGAGGAGGTCGACCT-GTCGAAGGACATGAAAGAT 496084 Query 1455855 TGGGTGTCGCTGAGCGACGAC-GAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| | |||||| | ||| ||||| ||||||||| |||||| ||||| ||||| || Sbjct 496083 TGGGAGGCGCTGAA-GCCGAGTGAGCGTCATTTCATCTCGCACGTGCTCGCATTTTT-CG 496026 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 |||| || |||||||| |||||| |||| || || || | | ||||| || Sbjct 496025 CCGCGTCGGACGGCATCGTTAACGAGAATCTGGTCGAACGGTTCAGCCAGGAGGTGCAGG 495966 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | || || || | || ||||| ||||||||||| || |||||| ||||| || | Sbjct 495965 TAACCGAAGCGCGCTGCTTCTACGGATTCCAGATCGCGATGGAAAACGTCCACAGCGAGA 495906 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTC 1456062 || ||||||||||||||||| ||| || Sbjct 495905 TGTATTCGCTCCTGATCGACACGTACATC 495877 Score = 132 bits (146), Expect = 7e-25 Identities = 142/183 (78%), Gaps = 11/183 (6%) Strand=Plus/Minus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC--- 1456152 |||||||| || |||||| |||| ||| ||||||||||||||| |||| |||||| Sbjct 495760 GCCATCGAAACACTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGGATCTCG 495701 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 | |||| ||| | |||||| ||||||| | || | |||||||| |||||||||| Sbjct 495700 AGCAAGAAGGCCA-----ACTTTGGCGAGCGGGTGGTTGCGTTTGCCGCCGTCGAGGGCA 495646 Query 1456212 TCTT-TTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 |||| ||| |||| || ||| |||||| || ||||| |||||||| ||||| ||||| Sbjct 495645 TCTTCTTTAGCGGG-AGCTTCGCCGCCATTTTCTGGCTGAAGAAGCGGGGCCTGATGCCG 495587 Query 1456271 GGT 1456273 ||| Sbjct 495586 GGT 495584 >seq19 Length=3534686 Score = 134 bits (148), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 || |||||| ||| || ||||||||| || ||| || ||| ||||||||||| Sbjct 2152863 CGTCCGCAGCTTTCTTCCTGCTTTCTGCTGACGATGTCGGACGACAGCATCGAGGGCATT 2152922 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 || |||||| | |||||||||||||| || || ||| ||||||| ||||| || || Sbjct 2152923 TACGACACGTTGAAGCAGTGCGCGCTGATTTCGAAGTCGGCCGGAGGCATTGGCTTGAAT 2152982 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||| | || || ||| | ||| | || ||||| ||||| |||||||| Sbjct 2152983 GTCCACTGCATCCGTGCGAAGGGAACGTACATCGCAGGCACGAACGGAATTTCCAACGGG 2153042 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || ||||| ||||| ||||| | ||| |||| |||||||| ||||||||| || Sbjct 2153043 CTGGTGCCGATGCTGCGCGTCTACAACAACACCGCGCGCTATGTCGACCAGGGC 2153096 >seq705 Length=18649 Score = 123 bits (136), Expect = 4e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| ||||| || || || || ||| || |||| | Sbjct 16267 ATCTACAAGGTGCTGAAGCAAGTGCA-TCCGGACACG--GGCATATCGTC---CAAGGCG 16214 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| | |||| ||| Sbjct 16213 ATGAGCATCATGAACAGTTTCGTGAACGACATCTTCGAGCGCATCGCCGCCGAAGCCTCC 16154 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || ||||||||| |||||| ||||||| |||||||| ||||| Sbjct 16153 CGGCTGGCGCACTACAACAAGCGTTCGACGATCACGTCGCGCGAAATCCAGACTGCCGTC 16094 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | | | || || |||||| ||| ||||| |||||||| || Sbjct 16093 CGTCTGCTGCTACCTGGTGAGTTGGCCAAGCATGCCGTTTCCGAGGGAAC 16044 Score = 102 bits (112), Expect = 1e-15 Identities = 136/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| ||||| || || || || ||| || |||| | Sbjct 15661 ATCTACAAGGTGCTGAAGCAAGTGCA-TCCGGACACG--GGCATATCGTC---CAAGGCG 15608 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| ||||||| | |||| ||| Sbjct 15607 ATGAGCATCATGAACAGTTTCGTGAACGACATCTTCGAGCGCATCGCCGCCGAAGCCTCC 15548 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||||| || ||||||||| |||||| ||||||| |||||||| ||||| Sbjct 15547 CGGCTGGCGCACTACAACAAGCGTTCGACGATCACGTCGCGCGAAATCCAGACTGCCGTT 15488 Query 725091 CGCCTG 725096 || ||| Sbjct 15487 CGTCTG 15482 >seq3 Length=13649947 Score = 118 bits (130), Expect = 2e-20 Identities = 229/333 (69%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 332872 AAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCAT-TGACGACGTGTTGC 332930 |||||| || || ||||| || ||| | | ||||||| | | | || ||||| | Sbjct 12269833 AAAGCGTAGCATCGCACAGCGTGACTGGATAGGTTCGATGATCTTCTCACTG-GTGTTAC 12269775 Query 332931 AGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGT 332989 |||||||||| || || || || ||| | | ||||||| || |||| |||| ||||| Sbjct 12269774 AGGCCAGGGCGAAACGGGTAGTGTTGCTGTAGATTTCCATCGTACGAC-GGAGAGCCTGC 12269716 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGC 333049 ||||| | || | || ||| || ||||||||||| | |||||||||||| || Sbjct 12269715 TGGGCTCCTTCGGTCATGCTGTCCGCTTCGTCGAGGATAACGATCTTGTGGCGGCCTCTG 12269656 Query 333050 GGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCG 333109 |||| |||| ||| | ||| |||||| | || ||||| || || | || Sbjct 12269655 GGCAACGTAACCTTTTGCTGGGCAAACATTTTGATCTTATTCCGCACAACATCAATACCA 12269596 Query 333110 CGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACG 333169 || |||| |||||||| || || ||||| || ||| | | |||||||| |||| Sbjct 12269595 CGTTCGTTGGACGCGTTCAGCTCCAGCACTGCTTCGCGGAAGTTCGCACCCAGAAGGATA 12269536 Query 333170 CGCGCCAGGCACGCGATGCTCGTGGTCTTGCCC 333202 || |||| ||| |||| |||| || || ||| Sbjct 12269535 CGGGCCAAGCAGAGGATGGTCGTCGTTTTACCC 12269503 >seq4 Length=12071184 Score = 107 bits (118), Expect = 3e-17 Identities = 237/347 (68%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || ||||| |||| || | | ||||| | || | | ||||||| ||| | ||| Sbjct 2921011 AACGGCGTCGCGTCACCGATTTCGCCCTTGTTCGAGCCGAGCTTGCCCTGGATGCACTCG 2921070 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 |||| | ||| || ||||| |||||||||||||||||||||||||| | || || ||| Sbjct 2921071 ATCAAATGGCCGATCGTCATACGCGACGGGATGGCGTGCGGGTTGATGATGATATCTGGC 2921130 Query 1600640 GTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCAC--GCTGCCCACGG 1600697 ||| || ||| ||| || | ||||||||||| ||| | | || | |||| || Sbjct 2921131 GTGATGCCCTCGC-AGGTGA--ACGGCATGTCCTC-CTGGCG-GTACTGGATGCCGCAGG 2921185 Query 1600698 TGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCT-CGGGCTGGCGCATGGCC 1600756 | ||||| || |||||||| || | | |||||||| | || |||| | ||||| | | Sbjct 2921186 TACCCTTCTGACCGTGGCGGGATGCAAACTTGTCGCCGATCTGCGGGAT-GCGCACCGAC 2921244 Query 1600757 CGCGTGACGATCTTGACCGCGTTGGCGCCGTCGCCGTTGCGCGTCACGACGACGCGATGC 1600816 ||| | |||||| ||| ||| |||| |||| |||||| | || | | Sbjct 2921245 CGCACGCGAATCTTGCAGAACTTGTAGCCCTCGCTGTTGAGCGTCAGCATCACCTGGTCG 2921304 Query 1600817 ACCGTTGCCGCTTCGTTGGTGCGCAGGATGGTCGACTTGTCGCGCTT 1600863 || | | | |||| | ||||||||| || ||| ||| ||||| Sbjct 2921305 ACGATACCGGTTTCGGAGTTGCGCAGGAACGTGGACCCGTCTCGCTT 2921351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177678964530102