Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq8 131 2e-25 seq1 109 5e-19 seq3 105 6e-18 seq2 93.3 4e-14 >seq8 Length=9380469 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||| | || |||||| ||||||||||| |||| | Sbjct 4936199 CCACCACGCAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 4936140 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| | || ||||||||||| || || || |||| ||||||||||||| ||| Sbjct 4936139 AGCGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGA 4936080 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||| || | || ||| Sbjct 4936079 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4936020 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || |||||||| | ||||| || || |||||||| Sbjct 4936019 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4935973 >seq1 Length=20238125 Score = 109 bits (120), Expect = 5e-19 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||| || | |||| |||||| ||||| ||||| |||| Sbjct 19807251 CCACCACGAAGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGAT 19807192 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| ||| || || || || |||| || || || || | |||| Sbjct 19807191 AGCGTGCGGCCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGA 19807132 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| || |||||| ||||| | | | | |||||| || || ||| Sbjct 19807131 ATTCCCTCCTTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACC 19807072 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA---TTCTGTG 35742 || | |||||| || || || || | ||||||||||| ||||||| ||||||| Sbjct 19807071 TCAAGCGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCATCTTTCTGTG 19807016 >seq3 Length=13649947 Score = 105 bits (116), Expect = 6e-18 Identities = 199/290 (69%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||| | ||||| || || || || || || |||||| | | |||| | Sbjct 8055083 TGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCACGGTTTCCTGCGCA 8055024 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250 |||| ||| ||||||||| | |||||| | || | | | ||||||| | Sbjct 8055023 TGTACTGGGCGAAGAAGATACTCGAGTGGACCAAAACTCCCGAGGAAGCGCTCGAGACGG 8054964 Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310 | |||||||| |||||| |||||| |||| || |||||||| ||||| ||||| || | Sbjct 8054963 CAATCTATCTCAACGACCGGTACAGCCTGGATGGACGCGACCCGAACGGATACGTCGGTT 8054904 Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCTACGGC 44369 | |||||||| || ||| | ||||| |||||| ||| ||| | |||| ||| Sbjct 8054903 GCATGTGGTCGATCGCCGGCATTCACGATCAGGGC-TGGAAGGAGAGAGAAATCTTCGGT 8054845 Query 44370 AAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAA 44419 ||| | | |||||||||||| | || || |||||||| | || || Sbjct 8054844 AAAATAAGATACATGAACTACGAAGGATGTAAGCGAAAGTTTAACGTTAA 8054795 >seq2 Length=16623535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||| ||||| | | | ||||| || | || |||||| || |||||||| ||| Sbjct 2043755 TTTCCGCCACGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2043696 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || |||| |||||||||||||| || || ||||| |||||||| || | Sbjct 2043695 GACAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGATCTGGG 2043636 Query 35627 GGAACGCTCTCCTTGTCCATGATCTT 35652 |||| | |||||||||| |||||| Sbjct 2043635 GGAATACCCTCCTTGTCCTGGATCTT 2043610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450785874524680