Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq19 297 2e-75 seq1 111 2e-19 seq8 107 2e-18 seq10 98.7 1e-15 seq7 98.7 1e-15 >seq19 Length=3534686 Score = 297 bits (328), Expect = 2e-75 Identities = 1201/1869 (64%), Gaps = 50/1869 (3%) Strand=Plus/Plus Query 7474 GAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGC--TACTTGT 7531 || ||||||| || ||| |||||||| | | ||||| | || ||| ||| || Sbjct 2152641 GATCGCGATTTCGGCTACAATTATTTTGGCTTCAAAACGCTGGAA--CGGTCGTACCTGC 2152698 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 |||| ||||| ||| | || || ||| || || |||||| ||||||| || | | Sbjct 2152699 TGAAGATCAAGGGCAAGATCGTTGAGCGACCGCAGCATATGCTGATGCGCGTAGCCATCG 2152758 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 ||||||||||||| || || || || ||| | || || || | | | || | Sbjct 2152759 GCATTCACGGCGAGGATATCGATGCGGCCATAGAGACCTATAATCTACTCTCGGAGCGTT 2152818 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACA-AACGCGCCTCAATTGTCC 7710 | |||||||| || ||||| || ||||||| || | ||| |||| || || | || Sbjct 2152819 ACTTTACGCATGCGTCGCCTACATTGTTTGCGGCTGCGACACAACGT-CCGCAGCTTTCT 2152877 Query 7711 TCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGC 7770 || || ||| |||| || ||| || ||||||||||| ||||||||| ||||| || Sbjct 2152878 TCCTGCTTTCTGCTGACGATGTCGGACGACAGCATCGAGGGCATTTACGACACGTTGAAG 2152937 Query 7771 GATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGC 7830 | ||||| ||||| || | | ||| || || || |||| || || | | || Sbjct 2152938 CAGTGCGCGCTGATTTCGAAGTCGGCCGGAGGCATTGGCTTGAATGTCCACTGCATCCGT 2152997 Query 7831 GCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTG 7890 || || || | ||||| ||| ||||||| ||| ||| | | ||| ||| || Sbjct 2152998 GCGAAGGGAACGTACATCGCAGGCACGAACGGAATTTCCAACGGGCTGGTGCCGATGCTG 2153057 Query 7891 CGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCC 7947 ||||| | ||| ||| | | ||| |||| |||||||| || || |||| || || Sbjct 2153058 CGCGTCTACAACAACACCGCGCGCTATGTCGACCAGGGCGGCAACAAGCGCCCCGGTGCG 2153117 Query 7948 GCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGC 8007 || ||||| | ||||||||||||| || | | || | || ||||| Sbjct 2153118 TTCGCGATCTACCTCGAGCCGTGGCACGGCGATGTGTTCGAGTTTCTCGATCTGAAGAAG 2153177 Query 8008 AACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGAT 8067 |||| || || || | |||||||| | |||| || | |||||||| ||| Sbjct 2153178 AACACCGGCAAGGAGGAGGTCCGCGCGCGCGACATGTTCTACGCCCTCTGGGTGCCGGAT 2153237 Query 8068 CTGTTTATGAGGCGCGTTCATTTCGACGCACAA----TGGTCGCTCATGTGCCC---CGA 8120 ||||| ||| |||||| | | || || | ||| | |||||||| ||| Sbjct 2153238 CTGTTCATGCAGCGCGTCGA----GGCGAACGAGATGTGGAGCTTGATGTGCCCGCACGA 2153293 Query 8121 TCGTTGCCCTTTAT-TAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAAT 8179 | || ||| | | | ||| || | |||||| | | |||| | | Sbjct 2153294 TTGT--CCCGGACTGTCGGATTCGTGG--GGAGAGGAGTTTGAAAAGCTCTACACAGGCT 2153349 Query 8180 ACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTA 8239 |||| | || ||| || | || || || || || | || ||| ||||| | Sbjct 2153350 ACGAGAAGGAGGGCCGGTTTATCCGTCAGGTCAAGGCTCAGGATCTGTGGTTTGCCATCA 2153409 Query 8240 TCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCA 8299 |||||| || ||| || || | ||||||||||||||||| || || ||||| || Sbjct 2153410 TCGAATCGCAGGTCGAGACGGGCGTCCCGTACATGCTGTACAAGGATGCGTGCAATCGCA 2153469 Query 8300 AAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTAC 8359 | ||||| ||| ||||||||||| || ||| || |||||| | ||||| || Sbjct 2153470 AGAGCAACCAACAGAACGTGGGCACAATCAAGTGCTCAAACCTGTGCACGGAAATCGTCG 2153529 Query 8360 AGTACAGCGCGCCC---GACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACG 8416 ||||| || || || ||| | || || |||||||| || || | | ||| Sbjct 2153530 AGTACT---CGTCCAAGGATGAAATAGCGGTCTGCAATCTGGCATCAATCGCGCTGAACA 2153586 Query 8417 CGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAG 8476 |||||| | | || | | ||| ||||| |||| || |||| | | || |||| Sbjct 2153587 TGTTCGTGAAGC--CGGACCA-CACGTACGATTTTGCGAAACTGAAGGAAGTCGC-CAAG 2153642 Query 8477 TGACGGTA---CGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAG 8533 || || ||||| | | ||||| || | || | || || || |||| Sbjct 2153643 --ACTGTCACGCGCAACCTGAACAAAATCATCGACATTAACTACTACCCGGTGCCGGAAG 2153700 Query 8534 CGC-GCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGAC 8592 || ||| || |||||||||||||| || | || | |||||||| || ||||||| Sbjct 2153701 CGAAGCGC-TCCAACATGCGCCACAGGCCGATCGGTATCGGCGTGCAGGGCATGGCCGAT 2153759 Query 8593 GCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAA 8652 ||||| || ||||| ||| ||||| || |||| |||| | ||| ||| | || Sbjct 2153760 GCGTTCATTCTGATGCGCTACCCGTACGAGAGTGAAGAGGCGCAGAAGCTGAACCAACAA 2153819 Query 8653 ATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACT---TGCCCGAGAA 8709 || ||||| | || |||||||| || || ||||| ||| | || ||||| || Sbjct 2153820 ATCTTCGAAACCATCTACTACGGCGCTTTGGAGGCCAGTTGTGAGCTGGCCGCCCGCGA- 2153878 Query 8710 TTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGAC 8769 ||||||||||| |||||| |||||| || | |||| || || |||| |||||| Sbjct 2153879 --TGGCACGTACGAGACGTACGAGGGCAGTCCGGTCAGCAAGGGGATGCTGCAGTACGAC 2153936 Query 8770 ATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCT 8829 |||||||| || |||||| ||||||| ||| | | |||| || ||||| Sbjct 2153937 ATGTGGAACAAGACCCCCACCGAGCTGTGGAACTGGGGTGTGCTGAAGGAAAAGATTGCC 2153996 Query 8830 CAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAA 8889 | || | ||||| ||||| || ||||| ||||| ||||| | || || || Sbjct 2153997 AAGCATGGCGTTCGCAACTCGCTTCTGTTGGCTCCGATGCCGACCGCTTCCACCGCGCAG 2154056 Query 8890 ATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTG 8949 || |||| |||||||| || || ||||||| ||| ||||| ||| | || ||| Sbjct 2154057 ATCTTGGGCAACAACGAGTCGTTCGAGCCGTACACTTCGAACGTCTACAATCGGCGTGTG 2154116 Query 8950 TTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGC 9009 || | ||||| || | | |||| ||||||| | | ||| ||| || ||| Sbjct 2154117 CTGTCGGGCGAGTTCCAGGTCGTCAATCATCATTTGCTACAGGACCTGACGGATTTAGGC 2154176 Query 9010 GTTTACGACGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATT 9069 | | ||||| ||||| | |||| | | ||| || | | ||||| || Sbjct 2154177 CTGTGGGACGATGAAATGAAAAACAACATCCTCGCGCACAATGGTTCCATCCAGAAGATC 2154236 Query 9070 GACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGC 9129 || | | || || ||||| || |||| || || ||||||||||| | | Sbjct 2154237 GAGGAAATTCCGCAGCACATCCGCGACTTGTACAAGACGGTTTGGGAAATTTCGGTGAAA 2154296 Query 9130 ACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAAC 9189 ||| ||| ||||| || ||| | || || || ||||| ||| || || || ||| Sbjct 2154297 ACGTGTATCAAAATGGCGGCCGATCGTGGGGCGTTCATTGACCAGTCGCAGTCGTTCAAC 2154356 Query 9190 GTGTTCGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAA 9249 | ||| |||| || | ||| | | | || | ||||||| | ||||| Sbjct 2154357 ATTCACGTGGCCGAGCCGAATTATGGTAAGCTGACGTCGATTCATTTCTACGGCTGGAAG 2154416 Query 9250 ATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAAC-CTATCAA 9308 ||||| | || || ||||||||||| ||||||| || || || | ||||| | ||| | Sbjct 2154417 ATGGGCCTGAAGACGGGCATGTACTACCTGCGCACCAAGCCGGCAG-TGAACGCGATCCA 2154475 Query 9309 ATTTACAGT 9317 ||||| || Sbjct 2154476 GTTTACGGT 2154484 >seq1 Length=20238125 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||||||| ||||| ||||| || ||||| ||||| ||||||||| | ||| | Sbjct 19807242 AGTCGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGG 19807183 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||||||| || || |||| ||| || ||||| || || || || || Sbjct 19807182 CCATCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCC 19807123 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | ||||| |||| || || || || || Sbjct 19807122 TTATCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTG 19807063 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || | ||||| || ||||| ||||| || Sbjct 19807062 ATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCATCTT 19807022 >seq8 Length=9380469 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| || || || || || ||||| ||||||||||||||| | ||| | Sbjct 4936190 AGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGC 4936131 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| ||||||||| || ||||| ||||| || Sbjct 4936130 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATGCCCTCC 4936071 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | || || || | || || || || ||| Sbjct 4936070 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 4936011 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| || | ||||| ||||| || ||||| ||| Sbjct 4936010 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 4935969 >seq10 Length=7496699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 237/354 (67%), Gaps = 10/354 (3%) Strand=Plus/Plus Query 21528 CAATTCCACGCACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATT 21587 ||| ||||| || ||||| || ||||| || ||||| || |||| || || || Sbjct 495341 CAACTCCACCAGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACAGTT 495400 Query 21588 CATGCCCAACAGATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGC 21647 ||| || | || ||||||||| ||||| | |||| ||||||| |||||| |||||| Sbjct 495401 CATACCGAGCATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCACCGC 495460 Query 21648 TTCCTTGATCATGGCGTGTATTTCACCGGCGGACAATTTGTCTTGAGGCTCGATGTATTT 21707 || ||| ||| | | ||| || | | | ||| | | | | ||| || Sbjct 495461 ATCGCGGATGATGCTGGTCA---CACGTTCGCGCG--TCGGCTTCTG-CACCAGGTACTT 495514 Query 21708 GTTGTAGTAGAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATTCGTT 21767 | | ||||| ||||| | | ||||| ||||||||||||||||||| ||||| Sbjct 495515 GA---ACATCAGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTT 495571 Query 21768 GCTGAACGTGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAAAGCT 21827 ||| || | ||| ||||| | || || || || | | ||||| || || ||||| Sbjct 495572 CGAGAAGGTCAAACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCT 495631 Query 21828 ACCGGaaaaaaaCACGCCCTCCACAATGGCGAACGCCACCATGCGCCGCGCCAA 21881 ||| ||| || | |||||| || ||| ||||| |||| || | |||||| Sbjct 495632 CCCGCTAAAGAAGATGCCCTCGACGGCGGCAAACGCAACCACCCG-CTCGCCAA 495684 >seq7 Length=10083987 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||| |||| |||| || ||||| | |||||| | | || || ||||| ||| | Sbjct 5671031 CCACCTTTGAGCCGCAGGACCAGGTGCATCGTGGAGCCGTGCTGGATATTGTAATCGGAA 5670972 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | | | | || || ||||| || || || || || | |||||||| ||||| | | Sbjct 5670971 ATGATTCGCCCATCTTCCAGCTGCTTTCCCGCGAAGATGATGCGCTGCTGGTCGGGTGCT 5670912 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT---GTGTCGGACGATTCC 134663 || || ||| || | |||||| |||| ||||||| || ||||||| | | Sbjct 5670911 ATACCCTCTCGCTCCTCAATTTTGCTCTTGAT---GTCCAATACCGTCTCGGACGCTACG 5670855 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 || || || ||||| || || ||||| |||||||| || || ||||||||||| || Sbjct 5670854 ACATCCAGCGTAATCGTCTTGCCGGTCAAAGTTTTCACAAAGATTTGCATTTTTTT 5670799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389738734920