Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq19 154 1e-32 seq1 104 2e-17 seq7 87.8 2e-12 >seq19 Length=3534686 Score = 154 bits (170), Expect = 1e-32 Identities = 1007/1605 (63%), Gaps = 35/1605 (2%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || ||||| || || || || || || |||||||||||||||| || |||||||| Sbjct 2154490 TTGTCGACCGTAAACTGGATCGCGTTCACTGCCGGCTTGGTGCGCAGGTAGTACATGCCC 2154431 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGT 130525 || || || || || || || || || || || | ||||| || Sbjct 2154430 GTCTTCAGGCCCATCTTCCAGCCGTAGAAATGAATCGACGTCAGCTTACCATAATTCGGC 2154371 Query 130526 TGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCC 130585 | |||||| ||||||| ||| ||||| || ||||| || || || | || || ||| Sbjct 2154370 TCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATGAACGCCCCACGATCGGCCGCC 2154311 Query 130586 ATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGT 130645 || | || ||||| || |||||| | |||||||| | || | ||||| Sbjct 2154310 ATTTTGATACACGTTTTCACCGAAATTTCCCAAACCGTCTTGTACAAGTCGCGGATGTGC 2154251 Query 130646 TTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATA 130705 | || || | | ||| || | | ||| |||| || | || | ||| ||| Sbjct 2154250 TGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGCGCGAGGATGTTGTTTTTCAT- 2154192 Query 130706 CTTTTATCGT---ACAATCC--AAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 || ||||| ||| || || | || || || | || |||||||| ||| | || Sbjct 2154191 --TTCATCGTCCCACAGGCCTAAATCCGTC--AGGTCCTGTAGCAAATGATGATTGACGA 2154136 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 || || || || | ||| || || | | ||| | ||| ||| |||| || || | Sbjct 2154135 CCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACG 2154076 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAG 130880 | ||||||||||| || || || || || | ||||| ||||| |||| | || | Sbjct 2154075 ACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCATCGGAGCCAACAGAAGCG 2154016 Query 130881 AATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGG 130940 | || |||| || ||| | | || ||| ||||| || |||| | ||| || || Sbjct 2154015 AGTTGCGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACCCCAGTTCCACAGCTCGG 2153956 Query 130941 TAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATT 131000 | || | ||||||||||| || | || || || || || ||| | |||||| | Sbjct 2153955 TGGGGGTC---TTGTTCCACATGTCGTACTGCAGCATCCCCTTGCTGACCGGACTGCCCT 2153899 Query 131001 CGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGT 131060 || ||| ||||| | || ||| ||||| || || || |||||||| |||| Sbjct 2153898 CGTACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACAACTGGCCTCCAAAGCGCCGT 2153839 Query 131061 AATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAA 131120 | || ||||||||| ||||||| || | | | ||| | | |||||||| || Sbjct 2153838 AGTAGATGGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCCTCTTCACTCTCGTACGGGT 2153779 Query 131121 ATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTT 131180 | ||| | ||| || || || || | ||||| | || | || | ||| || || Sbjct 2153778 AGCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCCGATACCGATCGGCCTGTGGC 2153719 Query 131181 TTAAATTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGTT 131238 | || | || | | ||| || || ||||||||| || |||||||| Sbjct 2153718 GCATGTTGGAGCGCTTCG--CTTCCGGCACCGGGTAGTAGTTAATGTCGATGATTTTGTT 2153661 Query 131239 TAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGT 131298 | |||||| ||| | | | ||| |||| ||| | ||||| ||||| | Sbjct 2153660 CAGGTTGCGCGTGACAGTCTTGGCGACTTCCTTCAGTTTCGCAAAATCGTACGTG--TGG 2153603 Query 131299 TTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTC 131358 | || | || || || || | ||||| |||||||| || || || |||| || Sbjct 2153602 TCCG-GCTTCACGAACATGTTCAGCGCGATTGATGCCAGATTGCAGACCGCTATTTCATC 2153544 Query 131359 ATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATT 131418 | | |||| || ||||| | ||||| || || ||| || ||||||| || Sbjct 2153543 CTTGGACGAGTACTCGACGATTTCCGTGCACAGGTTTGAGCACTTGATTGTGCCCACGTT 2153484 Query 131419 TTGTTGATTGCTTTTAGCATT-CACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTT 131477 ||||| ||||| || ||| ||| |||||||||| |||||| || |||||| | Sbjct 2153483 CTGTTGGTTGCTCTTGCGATTGCAC-GCATCCTTGTACAGCATGTACGGGACGCCCGTCT 2153425 Query 131478 CGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACAATTGATATTTGTA 131535 |||| || | ||| || ||| | || | || | |||| | ||| | | Sbjct 2153424 CGACCTGCGATTCGATGATG--GCAAACCACAGATCCTGAGCCTTGACCTGACGGATAAA 2153367 Query 131536 TTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC 131595 |||| || ||||| | ||| | | ||||||| | | || ||||| || Sbjct 2153366 CCGGCCCTCCTTCTCGTAGCCTGTGTAGAGCTTTTCAAACTCCTCTCCCCACGAA---TC 2153310 Query 131596 C-AAATT--GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCG 131652 | | | | |||||| ||| || ||||| | ||||| ||||| || || || Sbjct 2153309 CGACAGTCCGGGACAATCGTGCGGGCACATCAAGCTCCACATCTCGTTCGCCTCGACGCG 2153250 Query 131653 CTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTC 131712 || ||| |||| |||||||||||| | ||||| |||| || | || ||| || Sbjct 2153249 CTGCATGAACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGCGCGCGCGGACCTCCTC 2153190 Query 131713 TGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAA 131772 | || | | || |||| || | ||| || || | || | ||||| || || | Sbjct 2153189 CTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCGAACACATCGCCGTGCCACGGCTCGAG 2153130 Query 131773 ATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTT 131829 || | || | || || |||| || ||||| || | |||| || | |||| Sbjct 2153129 GTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGACATAGCGCGCGGTGTT 2153070 Query 131830 GTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA 131889 |||||| ||||||| ||| ||| ||| ||||||| |||| || |||| ||||| Sbjct 2153069 GTTGTAGACGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGTTCGTGCCTGCGATGTA 2153010 Query 131890 GCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGAT 131949 | || || || | ||| ||| || || | ||||| |||||| | | || || || Sbjct 2153009 CGTTCCCTTCGCACGGATGCAGTGGACATTCAAGCCAATGCCTCCGGCCGACTTCGAAAT 2152950 Query 131950 TAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 || ||||| | | | |||| || || || || | |||||| Sbjct 2152949 CAGCGCGCACTGCTTCAACGTGTCGTAAATGCCCTCGATGCTGTC 2152905 >seq1 Length=20238125 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||| || | |||||| || || ||||||||||||||| | |||| | Sbjct 19807239 CGCAACACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCGGATAGCGTGCGGCCA 19807180 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || | |||||| |||||| | || ||||| |||||||| || || | ||||| ||| Sbjct 19807179 TCCTCCAACTGTTTGCCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATTCCCTCCTTA 19807120 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | || | ||||| | | || || || || || || Sbjct 19807119 TCTTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGCGTGATG 19807060 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || ||||||||||| || ||||| Sbjct 19807059 GTCTTCCCAGTGAGGGTTTTCACAAAAATCTGCAT 19807025 >seq7 Length=10083987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27032 CCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTC 27091 ||||| |||| || | ||| ||| | | || |||||||| ||| ||| | ||| | Sbjct 5671020 CCGCAGGACCAGGTGCATCGTGGAGCCGTGCTGGATATTGTAATCGGAAATGATTCGCCC 5670961 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||||| ||||| || || ||| | |||| ||||| || || || | | ||||||| Sbjct 5670960 ATCTTCCAGCTGCTTTCCCGCGAAGATGATGCGCTGCTGGTCGGGTGCTATACCCTCTCG 5670901 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || | || ||| | || | | ||| || || | ||| | || || || || || Sbjct 5670900 CTCCTCAATTTTGCTCTTGATGTCCAATACCGTCTCGGACGCTACGACATCCAGCGTAAT 5670841 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| |||| ||||||||||||||||||||| Sbjct 5670840 CGTCTTGCCGGTCAAAGTTTTCACAAAGATTTGCAT 5670805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927299744552