Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19 174 2e-38 seq10 132 6e-26 >seq19 Length=3534686 Score = 174 bits (192), Expect = 2e-38 Identities = 531/801 (66%), Gaps = 25/801 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||| ||| | ||||| || || || | || || || |||||||| || |||||||| Sbjct 2154104 GTAGACGTTCGAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGA 2154045 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| || ||| ||| |||| || | || || ||| Sbjct 2154044 AGCGGTCGGCATCGGAGCCAACAGAAGCGAGTTGCGAACGCCATGCTTGGCAATCTTTTC 2153985 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||| || ||| |||||| | || | | | || || |||| ||||||| |||| Sbjct 2153984 CTTCAGCACACCCCAGTTCCACAGCTCGG-TGGGGGTCTTGTTCC-ACATGTCGTACTGC 2153927 Query 110885 AGCA-CCCCTTGG-GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 |||| ||||||| ||| ||| ||||| | || || || | || | | | | Sbjct 2153926 AGCATCCCCTTGCTGACC--GGACTGCCCTCGTACGTCTCGTACGTGCCATCGCGGGCGG 2153869 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| ||||| || ||||||| | ||| || |||||||| ||||| | |||| Sbjct 2153868 CCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCA 2153809 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || || || || || || | | |||||| || ||| || |||| || | | Sbjct 2153808 GCTTCTGCGCCTCTTCACTCTCGTACGGGTAGCGCATCAGAATGAACGCATCGGCCATGC 2153749 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT--TTCGCG-CAGTCTCAA 111119 | || || || | ||| || || ||||| ||||| || || ||||| | | | | Sbjct 2153748 CCTGCACGCCGATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCAC-- 2153691 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || | || |||| |||| | ||| || || || ||| |||| | || || Sbjct 2153690 CGGG-TAGTAGTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGACTT 2153632 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGAAGGGC 111237 | | ||||| || |||| | ||| | ||| ||||| |||| | || || Sbjct 2153631 CCTTCAGTTTCGCAAAATCGTACGTGTG-GTCCGGCTTCACGAACATGTTC----AGCGC 2153577 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 ||||||||||| |||||| || || | |||||||| | |||||| | ||||| || Sbjct 2153576 GATTGATGCCAGATTGCAGACCGCTATTTCATCCTTGGACGAGTACTCGACGATTTCCGT 2153517 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || | ||| || | ||| || || |||| |||| |||||| ||||| |||||||| Sbjct 2153516 GCACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGC 2153457 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||| |||||||| || |||||||| ||| |||| || || || ||| Sbjct 2153456 ATCCTTGTACAGCATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCA 2153397 Query 111418 AACAT-CGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 111475 | || | | | || | || || | | | ||| |||||| |||||| ||||||| Sbjct 2153396 CAGATCCTGAGCCTTG-AC-CTGACGGATAAACCGGCCCTCCTTCTCGTAGCCTGTGTAG 2153339 Query 111476 AGGGCTTCAAACTCCTCACCC 111496 || |||||||||||| ||| Sbjct 2153338 AGCTTTTCAAACTCCTCTCCC 2153318 >seq10 Length=7496699 Score = 132 bits (146), Expect = 6e-26 Identities = 272/398 (68%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 ||||||| || || | || ||| | | || ||||| ||| | ||||| || || Sbjct 1111537 TCTATCAGGCGTCCACTTCCGAGCTTTACGGCAAGGTGGTGGAAACGCCACAGAATGAAA 1111478 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTC 9278 ||||||||||||| || ||||| |||| |||| | | |||| | ||| || Sbjct 1111477 AGACACCCTTCTATCCGCGCTCTCCGTACGCCTGTGCAAAACTGTACGGCT-ACTGGATC 1111419 Query 9279 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 9338 || | |||||||||||| | |||| ||||||| ||| || ||||| ||||||||| Sbjct 1111418 GTGATAAATTACCGCGAAGCGTACGACATGTTTGCCTGCAATGGCATCCTGTTCAACCAT 1111359 Query 9339 GAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CG-AGGGTATCAAAC 9396 || || || | || || | | | ||||| ||| ||||| || || ||| ||| Sbjct 1111358 GAGTCTCCCCGCCGGGGAGAAAATTTTGTCACCCGCAAGATAACGCGCTCGGTGGCAA-- 1111301 Query 9397 AAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATT 9456 |||| | ||| || |||||| | | || |||| || | || || || | || | Sbjct 1111300 AAATTTCGCTCGGTCAACAGGAGTGCTTGGAGCTGGGCAATCTCGACTCGAAGCGTGACT 1111241 Query 9457 GGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCG 9516 |||| |||||| ||||||| || || || |||||||| ||| | || || ||| || | | Sbjct 1111240 GGGGCCACGCGCAGGACTACGTCGAGGCCATGTGGCTGATGATGCAGCAGGAGAAACCGG 1111181 Query 9517 ACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 | || | ||| | || || |||||||| || || ||| Sbjct 1111180 AAGATTTTGTCATCGCCACCGGTGAGACGCACTCGGTG 1111143 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/422 (66%), Gaps = 8/422 (2%) Strand=Plus/Plus Query 122482 AGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATG 122541 || || ||||| | || |||| ||||||| |||||| ||| |||||||||||| Sbjct 495351 AGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACAGTTCATACCGAGC 495410 Query 122542 AGGTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACG 122601 | | ||||| || | | || |||| | | ||| ||| ||||| || | | Sbjct 495411 ATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCACCGCATCGCGGATG 495470 Query 122602 ATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGC 122660 ||| | | | |||| || || || | | | | || |||||| | | ||| Sbjct 495471 ATGCTGGTCACACGTTCGCGCGTCGG-CTTCTGCACCAGGTACTTGAACATCAGACAGGC 495529 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 ||| || ||| || ||||| || || ||||| || || || |||||| | ||| || Sbjct 495530 AAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGTCAAACCCGG 495589 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780 ||| || ||||||||||||| ||| |||| ||| ||| |||| |||||||| || Sbjct 495590 CATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTCCCGCTAAAGAAGATGCC 495649 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTGCATCA-AA 122837 ||| || |||||||||| | || ||| | ||| | | || |||| | | Sbjct 495650 CTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAGTTG---GCCTTCTTGCTCGAGAT 495706 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| |||| ||||| | |||||||||| | || || | |||| |||||| | || Sbjct 495707 CCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGCAGTGTTTCGATGGCATTGAA 495766 Query 122898 TA 122899 || Sbjct 495767 TA 495768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021237101600