Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10 114 2e-20 seq19 109 7e-19 seq5 89.7 6e-13 >seq10 Length=7496699 Score = 114 bits (126), Expect = 2e-20 Identities = 275/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 ||||| || || | || ||| | | || || || |||| | ||||| ||||| || Sbjct 1111535 TATCAGGCGTCCACTTCCGAGCTTTACGGCAAGGTGGTGGAAACGCCACAGAATGAAAAG 1111476 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTGGCTCGT 11920 || ||||||||||| || || || | | |||| | | |||| | ||| |||| Sbjct 1111475 ACACCCTTCTATCCGCGCTCTCCGTACGCCTGTGCAAAACTGTACGGCT-ACTGGATCGT 1111417 Query 11921 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGA 11980 || |||||||| ||| | || | | ||||| ||| ||| || || |||||||| || Sbjct 1111416 GATAAATTACCGCGAAGCGTACGACATGTTTGCCTGCAATGGCATCCTGTTCAACCATGA 1111357 Query 11981 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTATCAAACAA 12038 ||| ||||| || || |||| || || ||||| || || | ||| |||| | Sbjct 1111356 GTCTCCCCGCCGGGGAGAAAATTTTGTCACCCGCAAGATAACGCGCTCGGTGGCAAAAAT 1111297 Query 12039 ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGG 12098 ||| ||| | ||||| | | || |||| || ||| || | || | |||||| Sbjct 1111296 TTCGCTC--GGTCAACAGGAGTGCTTGGAGCTGGGCAATCTCGACTCGAAGCGTGACTGG 1111239 Query 12099 GGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGAC 12158 || || || ||||||| || || ||||||||||| | | || || || | |||| Sbjct 1111238 GGCCACGCGCAGGACTACGTCGAGGCCATGTGGCTGATGATGCAGCAGGAGAAACCGGAA 1111179 Query 12159 GAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 12208 || | |||| |||| || || ||||| ||||| || | || ||||| || Sbjct 1111178 GATTTTGTCATCGCCACCGGTGAGACGCACTCGGTGCGAGAATTCGTCGA 1111129 Score = 100 bits (110), Expect = 4e-16 Identities = 230/343 (67%), Gaps = 14/343 (4%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || ||||| | |||| |||| ||||||| |||||| || |||||||||||| Sbjct 495351 AGCAGCCGATCGGCGACGAACTCGATGTACTGCGACATCAGATCACAGTTCATACCGAGC 495410 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 | | |||||||| | | || |||| ||| ||| || ||| || || || | | Sbjct 495411 ATATCGACCGGGAGCGCCTTCGTGAGGAACTCCTGCTCGATCAGCACCGCATCGCGGATG 495470 Query 129959 ATGGCGTGAATGGTCTC-----CGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCC 130012 ||| ||||| | || || | || ||| | | || |||||| | | Sbjct 495471 ATGC------TGGTCACACGTTCGCGCGTCGGCTTCTGCACCAGGTACTTGAACA-TCAG 495523 Query 130013 AC-GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 || |||||| || ||| || |||||||| || || || || || ||||||||| || Sbjct 495524 ACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGTCAA 495583 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 ||| ||||| || ||||||||||||| ||||||||| || || || ||||| Sbjct 495584 ACCCGGCATCAGGCCCCGCTTCTTCAGCCAGAAAATGGCGGCGAAGCTCCCGCTAAAGAA 495643 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| ||||| || || ||||||| | ||||| ||||| Sbjct 495644 GATGCCCTCGACGGCGGCAAACGCAACCACCCGCTCGCCAAAG 495686 >seq19 Length=3534686 Score = 109 bits (120), Expect = 7e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 || |||||||| |||||||| || || | | |||||||| | |||||| | ||| Sbjct 2153581 AGCGCGATTGATGCCAGATTGCAGACCGCTATTTCATCCTTGGACGAGTACTCGACGATT 2153522 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 |||||||||| |||||| | ||| || ||||||| ||||| ||| || ||| || Sbjct 2153521 TCCGTGCACAGGTTTGAGCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTG 2153462 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 |||||||||||||| |||||||| || |||||||| Sbjct 2153461 CACGCATCCTTGTACAGCATGTACGGGACGCCCGTCTC 2153424 >seq5 Length=11808074 Score = 89.7 bits (98), Expect = 6e-13 Identities = 257/389 (66%), Gaps = 16/389 (4%) Strand=Plus/Plus Query 14047 GGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATC 14106 || |||| ||||| ||||| |||||||| || || || || || | || ||||| || Sbjct 11629676 GGGCACGTAGATCTGTCGATCGAAGCGACCCGGTCGAAGCAGCGCCTTATCTAGGATGTC 11629735 Query 14107 AATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC-TCGTTATCAAAGCCATCCATCT 14165 | ||||| ||||| || | || || | | |||| |||| | || || ||||||| Sbjct 11629736 CACCCGGTTGGTCGCGGCCAGTACGACCACGTTCGTCGTCGTGTTGAAC-CCGTCCATCT 11629794 Query 14166 CAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCA-----TCATTCGCAGG-CATACCAC 14219 | || || || |||| || | ||| | || || | || || | | || | Sbjct 11629795 CGACCAGCAGCTGGTTGAGCGTGTTTTCCTGCTCCGAGTGTCCTCCGAAGCTCTTTCCGC 11629854 Query 14220 CCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGAT 14279 | || | | ||||||||||| |||||||||||||| | || || ||| | Sbjct 11629855 CA------CGCTTCCGGCCGACGGCGTCGATTTCATCGATGAACAGAATGCAGGGTGCAC 11629908 Query 14280 TTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCT 14339 | | || || | | || ||||| ||||| | | | ||| || || || ||||||| Sbjct 11629909 TCTTGCGCGCCATCGCGAACATATCGCGCACACGCGATGGACCCACGCCGACGAACATCT 11629968 Query 14340 CCACAAAATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCT 14398 ||| ||| | | | | || || | |||||| |||||||| | ||||| ||| | || Sbjct 11629969 CCAAAAACTCCGAGCCCGAGACGGT-GATGAACGGGACGTTCGCCTCACCGGCGGTCGCC 11630027 Query 14399 CGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||||||| || || ||||| || || Sbjct 11630028 TTGGCGAGGAGCGTTTTGCCCGTACCCGG 11630056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424601566760