Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq19 136 5e-27 seq10 125 8e-24 >seq19 Length=3534686 Score = 136 bits (150), Expect = 5e-27 Identities = 678/1069 (63%), Gaps = 28/1069 (3%) Strand=Plus/Plus Query 104543 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AA 104601 || ||||| ||||| | ||| ||| ||||||||||| | || ||||| | | || Sbjct 2153049 CCGATGCTGCGCGTCTACAACAACACCGCGCGCTATGTCGACCA----GGGCGGCAACAA 2153104 Query 104602 G------GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCT 104655 | || | |||| |||| || ||||| ||||||| ||| | | ||||| || Sbjct 2153105 GCGCCCCGGTGCGTTCGCGATCTACCTCGAGCCGTGGCACGGCGATGTGTTCGAGTTTCT 2153164 Query 104656 TGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCT 104715 || || ||| || | ||||||| || ||||| | |||| ||| || Sbjct 2153165 CGATCTGAAGAAGAACACCGGCAAGGAGGAGGTCCGCGCGCGCGACATGTTCTACGCCCT 2153224 Query 104716 CTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTG 104775 |||| | || ||||| |||||| || | || |||| || | | ||| | | || Sbjct 2153225 CTGGGTGCCGGATCTGTTCATGCAGCGCGTCGAGGCGAACGAGATGTGGAGCTTGATGTG 2153284 Query 104776 TCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACAC 104835 || || | || || || || ||| | ||| |||||||||||| || ||||| Sbjct 2153285 CCCGCACGATTGTCCCGGACTGTCGGATTCGTGGGGAGAGGAGTTTGAAAAGCTCTACAC 2153344 Query 104836 AAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAG-CTGCCGATGTGTGGAAAG 104894 | |||||| | || || ||| | | || | | | || || ||| ||||| | Sbjct 2153345 AGGCTACGAGAAGGAGGGCCGGTTTA-TCCGTCAGGTCAAGGCTCAGGATCTGTGGTTTG 2153403 Query 104895 CTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTA 104954 | || || | || || |||||| || || |||||||| ||||| || || || | Sbjct 2153404 CCATCATCGAATCGCAGGTCGAGACGGGCGTCCCGTACATGCTGTACAAGGATGCGTGCA 2153463 Query 104955 ACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAA 105014 | | ||||| || ||| |||| |||| |||||| | || || || || || |||| Sbjct 2153464 ATCGCAAGAGCAACCAACAGAACGTGGGCACAATCAAGTGCTCAAACCTGTGCACGGAAA 2153523 Query 105015 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCC 105074 || | || | | ||| ||||| | || || || || || ||||||||||| || Sbjct 2153524 TCGTCGAGTACTCGTCCAAGGATGAAATAGCGGTCTGCAATCTGGCATCAATCGCGCTGA 2153583 Query 105075 CCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGA 105134 || || ||| | || || | || | |||| || ||||| | ||||| | | Sbjct 2153584 ACATGTTCGTGAAGCCGGA---CCACACGTACGATTTTGCGAAACTGAAGGAAGTCGCCA 2153640 Query 105135 AAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTG 105194 | |||||||| ||||| |||| | | || || | || | ||||| || | | Sbjct 2153641 AGACTGTCACGCGCAACCTGAACAAAATCATCGACATTAACTACTACCCGGTGCCGGAAG 2153700 Query 105195 CTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 | || || ||| | ||| | || || ||| |||| || ||||| | || |||| Sbjct 2153701 CGAAGCGCTCCAACATGCGCCACAGGCCGATCGGTATCGGCGTGCAGGGCATGGCCGATG 2153760 Query 105255 TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCA 105314 |||||||| ||| || | | || || || ||| || | | || | | Sbjct 2153761 CGTTCATTCTGATGCGCTACCCGTACGAGAGTGAAGAGGCGCAGAAGCTGAACCAACAAA 2153820 Query 105315 TATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATG 105374 | || || ||||| || ||| |||| | ||||| |||| ||| |||| | |||| Sbjct 2153821 TCTTCGAAACCATCTACTACGGCGCTTTGGAGGCCAGTTGTGAGCTGGCCGCCCGCGATG 2153880 Query 105375 GTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGG-TGCTTCAATTTGATAT 105432 | | || || || | ||||| ||| | ||| ||||||| |||| || | || || Sbjct 2153881 GCACGTACGAGACGTACGAGGGCAGTCCGG--TCAGCAAGGGGATGCTGCAGTACGACAT 2153938 Query 105433 GTGGGAAGGTGA----GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCA 105488 || |||| || ||| |||| | |||||| | || |||||| || Sbjct 2153939 GT-GGAACAAGACCCCCACCGAGCT---GTGGAACTGGGGTGTGCTGAAGGAAAAGATTG 2153994 Query 105489 AGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCAC 105548 || | || |||| ||| || || ||||||| ||||| || || |||||||| | Sbjct 2153995 CCAAGCATGGCGTTCGCAACTCGCTTCTGTTGGCTCCGATGCCGACCGCTTCCACCGCGC 2154054 Query 105549 AAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 | |||||||| || || || | || || || ||||| ||||| |||| Sbjct 2154055 AGATCTTGGGCAACAACGAGTCGTTCGAGCCGTACACTTCGAACGTCTA 2154103 >seq10 Length=7496699 Score = 125 bits (138), Expect = 8e-24 Identities = 265/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 || || || || ||||| ||| | | || || || ||||| ||||| || || || Sbjct 1111535 TATCAGGCGTCCACTTCCGAGCTTTACGGCAAGGTGGTGGAAACGCCACAGAATGAAAAG 1111476 Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTCGT 7356 ||||||||||| || ||||| |||| |||| | | |||| | ||| |||| Sbjct 1111475 ACACCCTTCTATCCGCGCTCTCCGTACGCCTGTGCAAAACTGTACGGCT-ACTGGATCGT 1111417 Query 7357 CAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGA 7416 | |||||||||||| | |||| ||||||| ||| || ||||| ||||||||||| Sbjct 1111416 GATAAATTACCGCGAAGCGTACGACATGTTTGCCTGCAATGGCATCCTGTTCAACCATGA 1111357 Query 7417 ATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CG-AGGGTATCAAACAA 7474 || || | || || | | | |||||||| ||||| || || ||| ||| || Sbjct 1111356 GTCTCCCCGCCGGGGAGAAAATTTTGTCACCCGCAAGATAACGCGCTCGGTGGCAA--AA 1111299 Query 7475 ATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTGG 7534 || | ||| || |||||| | | || |||| || | || || | | || ||| Sbjct 1111298 ATTTCGCTCGGTCAACAGGAGTGCTTGGAGCTGGGCAATCTCGACTCGAAGCGTGACTGG 1111239 Query 7535 GGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGAC 7594 || |||||| ||||||| || || || |||||||| ||| | || || ||| || | || Sbjct 1111238 GGCCACGCGCAGGACTACGTCGAGGCCATGTGGCTGATGATGCAGCAGGAGAAACCGGAA 1111179 Query 7595 GAATATGTAGTAGCAACGGGTGAGACCCA 7623 || | ||| | || || |||||||| || Sbjct 1111178 GATTTTGTCATCGCCACCGGTGAGACGCA 1111150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250804368040