Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq19 347 1e-90 seq10 91.5 2e-13 >seq19 Length=3534686 Score = 347 bits (384), Expect = 1e-90 Identities = 1090/1661 (66%), Gaps = 68/1661 (4%) Strand=Plus/Plus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA-ACAAC--CCGCAGATGTC 19251 ||| ||||| ||| |||| || | || || | | ||| ||||| |||||| | || Sbjct 2152820 CTTTACGCATGCGTCGCCTACATTGTTT---GCGGCTGCGACACAACGTCCGCAGCTTTC 2152876 Query 19252 GAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAA 19311 ||| || || || | ||| ||| |||||||| |||||||| ||||| ||| | || Sbjct 2152877 TTCCTGCTTTCTGCTGACGATGTCGGACGACAGCATCGAGGGCATTTACGACACGTTGAA 2152936 Query 19312 GGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG---GA---TCCACTGCTCGAA 19365 | ||||||||| || || |||| | |||| || || || || |||||||| Sbjct 2152937 GCAGTGCGCGCTGATTTCGAAGTCGGCCGGAGGCATTGGCTTGAATGTCCACTGC----- 2152991 Query 19366 TATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCC 19425 ||||| ||| || || ||| || ||||||||| | || |||| | || || Sbjct 2152992 -ATCCGTGCGAAGGGAACGTACATCGCAGGCACGAACGGAATTTCCAACGGGCTGGTGCC 2153050 Query 19426 AATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAA 19485 ||||| ||||||| ||||||||| || | || ||| ||||||| ||| ||| ||| Sbjct 2153051 GATGCTGCGCGTCTACAACAACACCGCGCGCTATGTCGACCAGGGCGGCAACAAGCGCCC 2153110 Query 19486 GGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACT 19545 || ||||||| |||||||||||||| ||||||| || || | || || ||||| || Sbjct 2153111 CGGTGCGTTCGCGATCTACCTCGAGCCGTGGCACGGCGATGTGTTCGAGTTTCTCGATCT 2153170 Query 19546 GCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGAT 19605 | |||| || | |||||| | ||| |||||| | ||| ||| | ||| | Sbjct 2153171 GAAGAAGAACACCGGCAAGGAGGAGGTCCGCGCGCGCGACATGTTCTACGCCCTCTGGGT 2153230 Query 19606 TCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCA 19665 ||||| || |||||| || || ||| | |||| ||| | ||||||||||||| Sbjct 2153231 GCCGGATCTGTTCATGCAGCGCGTCGAGGCGAACGAGATGTGGAGCTTGATGTGCCCGCA 2153290 Query 19666 CGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC-CGGACTT 19724 ||| || || || || | || | || |||| ||| | || | ||| | | | | Sbjct 2153291 CGATTGTCCCGGACTGTCGGATTCGTGGGGAGAGGAGTTTGAAAAGCTCTACACAGGC-T 2153349 Query 19725 ACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCC 19784 ||| |||||||||| | |||| ||| | ||| | ||| | || Sbjct 2153350 ACGAGAAGGAGGGCCGGTTTATCCGTCAGGTCAAGGCTCAGGATCTGTGGTTTGCCATCA 2153409 Query 19785 TCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGC-CGCGAACGCC 19843 || || ||||||||||| ||| ||||||||| |||||||| || || | || | Sbjct 2153410 TCGAATCGCAGGTCGAGACGGGCGTCCCGTACATGCTGTACAAGGATGCGTGCAATCG-C 2153468 Query 19844 AAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATG 19903 ||| || || ||||| | ||| | ||||||| || |||||||| || |||||| | Sbjct 2153469 AAGAGCAACCAACAGAACGTGGGCACAATCAAGTGCTCAAACCTGTGCACGGAAATCGTC 2153528 Query 19904 GAG---GTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCG 19960 ||| ||||| ||| || | || || || |||||||| || | ||| Sbjct 2153529 GAGTACTCGTCCAA---GGATGAAATAGCGGTCTGCAATCTGGCATCAATCGCGCTGAAC 2153585 Query 19961 ACTTTCGTCAA---GGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTC 20017 | ||||| || || | | | | ||| ||||| ||| || | || || || | Sbjct 2153586 ATGTTCGTGAAGCCGGACCACACGTACGATTTTGCGAAACTGAAGGAAGTCGCCAAGACT 2153645 Query 20018 GTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGGCG 20074 |||||||| || ||||| ||||||| |||| ||||| | | || ||| | Sbjct 2153646 GTCACGCGCAACCTGAACAAAATCATCGACATTAACTACTACCCGGTGCCGGAAGCGAAG 2153705 Query 20075 CGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTT 20134 ||| || || ||||||||| ||||||||| |||||||| |||||| ||||||| | Sbjct 2153706 CGC---TCCAACATGCGCCACAGGCCGATCGGTATCGGCGTGCAGGGCATGGCCGATGCG 2153762 Query 20135 TTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATC 20194 ||||| || | || | | | ||| | |||||| |||| ||| | ||| Sbjct 2153763 TTCATTCTGATGCGCTACCCGTACGAGAGTGAAGAGGCGCAGAAGCTGAACCAACAAATC 2153822 Query 20195 TTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC---GTGCGAACTCGCCAAAGAGGAC 20251 ||||| || | ||| | |||| || |||| | || || || ||| || Sbjct 2153823 TTCGAAACCATCTACTA--CGGCGCT-TTGGAGGCCAGTTGTGAGCTGGCCGCCCGCGAT 2153879 Query 20252 GGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC--CGAGGGTATCCTCCAGCCGGACA 20309 ||| |||||||||||| | | ||| | ||| ||| | |||| || || ||| |||| Sbjct 2153880 GGCACGTACGAGACGTACGA-GGGCAGTCCG-GTCAGCAAGGGGATGCTGCAGTACGACA 2153937 Query 20310 TGTGGGGCGTCACTGAGAATGAGTTTTGGA------GCGCCCTCAAGGTTGAGAT---CA 20360 ||||| | || | ||| | |||| | | || |||| |||| || Sbjct 2153938 TGTGGAACAAGACCCCCACCGAGCTGTGGAACTGGGGTGTGCTGAAGGAAAAGATTGCCA 2153997 Query 20361 AGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCC 20420 || || || ||||||||||| | || | || || ||||||||||| || ||||| | Sbjct 2153998 AG---CATGGCGTTCGCAACTCGCTTCTGTTGGCTCCGATGCCGACCGCTTCCACCGCGC 2154054 Query 20421 AGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTA 20480 ||||| |||| ||||||||| | |||||||||||||| | ||| ||||| || ||| Sbjct 2154055 AGATCTTGGGCAACAACGAGTCGTTCGAGCCGTACACTTCGAACGTCTACAATCGGCGTG 2154114 Query 20481 CACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCG 20540 ||| | || |||||| | || || | || || | | ||| || | | | | Sbjct 2154115 TGCTGTCGGGCGAGTTCCAGGTCGTCAATCATCATTTGCTACAGGACCTGACGGATTTAG 2154174 Query 20541 ATATGTGGTCGCCCA--AAATTAAGAATGAAATTGTCCGAGC-CGGCGGGAGCGTCCAG- 20596 ||||| | | | |||| || || | || | || || | || | ||||| Sbjct 2154175 GCCTGTGG--GACGATGAAATGAAAAACAACATCCT-CGCGCACAATGGTTCCATCCAGA 2154231 Query 20597 GCAT--TGGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCAC 20654 || ||| || || ||| || || ||| | |||| ||| || |||||||| | Sbjct 2154232 AGATCGAGGAAATTCCGCAGCACATCCGCGACTTGTACAAGACGGTTTGGGAAATTTCGG 2154291 Query 20655 AGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGC 20714 ||| | ||| | |||||||||||||| || || | ||| |||||||| |||||| Sbjct 2154292 TGAAAACGTGTATCAAAATGGCGGCCGATCGTGGGGCGTTCATTGACCAGTCGCAGTCGT 2154351 Query 20715 TCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCT 20774 |||| | | ||| | |||| | ||||||| || || ||| | ||||||| Sbjct 2154352 TCAACATTCACGTGGCCGAGCCGAATTATGGTAAGCTGACGTCGATTCATTTCTACGGCT 2154411 Query 20775 GGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 || | | ||| || ||||||||||||||||| ||||| ||| Sbjct 2154412 GGAAGATGGGCCTGAAGACGGGCATGTACTACCTGCGCACC 2154452 Score = 334 bits (370), Expect = 8e-87 Identities = 1135/1738 (65%), Gaps = 70/1738 (4%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||||||||| || ||| ||||||| ||||| | || || | Sbjct 2154451 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAATGAATCGAC 2154392 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | |||||| | | |||| | ||| | ||||||| |||||| |||||||| ||| Sbjct 2154391 GTCAGCTTACCATAATTCGGCTCGGCCACGTGAATGTTGAACGACTGCGACTGGTCAATG 2154332 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 |||| || || ||||||||||| | ||| || || || ||| ||||| | ||| Sbjct 2154331 AACGCCCCACGATCGGCCGCCATTTTGATACACGTTTTCACCGAAATTTCCCAAACCGTC 2154272 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCA-GCGCTTGT--ACGCTCCCACCG-GC 78425 ||| | | | | | | | | || ||| | ||| | | | ||| | || Sbjct 2154271 TTGTACAAGTCGCGGATGTGCTGCGGAATTTCCTCGATCTTCTGGATGGAACCATTGTGC 2154212 Query 78426 TCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGAC 78485 || | || | || || |||| | || ||| | | | | || ||| | | Sbjct 2154211 GCG-AGGATGTTGTTTTTCATTTCATCGTCCCACAGGCCTAAATCCGTCAGGTCCTGTAG 2154153 Query 78486 CAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGT 78545 || || | || | | ||||||||| | ||| || || ||||| ||| | Sbjct 2154152 CAAATGATGATTGACGACCTGGAACTCGCCCGACAGCACACGCCGATTGTAGACGTTCGA 2154093 Query 78546 CGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCAT 78605 |||||||||||||| | ||||||||| |||| |||||| ||||| || ||||||||||| Sbjct 2154092 AGTGTACGGCTCGAACGACTCGTTGTTGCCCAAGATCTGCGCGGTGGAAGCGGTCGGCAT 2154033 Query 78606 GGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCC--- 78662 || || | ||| || || || |||| |||||| | |||| |||| || | Sbjct 2154032 CGGAGCCAACAGAAGCGAGTTGCGAACGCCATGCTTGGCAATCTTTTCCTTCAGCACACC 2153973 Query 78663 ---GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGA 78719 || ||| | || | | | | ||||||||| || || || |||| | Sbjct 2153972 CCAGTTCCACAGCTCGGTGGGGGTCTTGTTCCACATGTCGTACTGCAGCATCCCCTTGCT 2153913 Query 78720 CGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTC 78779 |||| |||| | |||||||||| | || || ||| || || || ||| Sbjct 2153912 GACCGGACTGCCCTCGTACGTCTCGTACGTGCCATCGCGGGCGGCCAGCTCACA--ACTG 2153855 Query 78780 GAG--CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT-T 78836 | || || ||| ||| | | |||||||| | ||| |||| |||||| | Sbjct 2153854 GCCTCCAAAGCGCCGTAGTAGATGGTTTCGAAGATTTGTTGGTTCAGCTTCTGCGCCTCT 2153795 Query 78837 GGTCTCGTCGAACGAAAGGCCGAGCATCA---TGAAGACATCGGCCAGGCCCTGGACGCC 78893 ||| ||| ||| || | |||||| |||| ||||||||| |||||| ||||| Sbjct 2153794 TCACTC-TCGTACG---GGTAGCGCATCAGAATGAACGCATCGGCCATGCCCTGCACGCC 2153739 Query 78894 GATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTCGGTCGGGTAAAA 78950 |||| ||||||| | ||||||||||||| | ||| ||| | | |||||| | Sbjct 2153738 GATACCGATCGGCCTGTGGCGCATGTTGGAGCGCTTCGCTTCCGGCAC---CGGGTAGTA 2153682 Query 78951 GTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTT 79010 ||| ||||||| ||||||||| |||||||| | | || || | || ||| Sbjct 2153681 GTTAATGTCGATGATTTTGTTCAGGTTGCGCGTGACAGTCTTGGCGACTTCCTTCAGTTT 2153622 Query 79011 GGCGAAATCAAAA-TGATTTCCT--TTGATGAAAGTCGGTAGGCAC-AGCGATGCCAGGT 79066 || ||||| | || ||| || | ||| | | | || | | |||||||| | Sbjct 2153621 CGCAAAATCGTACGTGTGGTCCGGCTTCACGAACAT-GTTCAGCGCGATTGATGCCAGAT 2153563 Query 79067 TGCACACGGCCGTCTCGTCC--GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA 79124 |||| || || | || ||| || | || | ||||| |||||| ||||||| || || Sbjct 2153562 TGCAGACCGCTATTTCATCCTTGGACGAGTA--CTCGACGATTTCCGTGCACAGGTTTGA 2153505 Query 79125 CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCA 79184 ||||||| ||||| | ||||| ||||||||||| || || || |||||||| Sbjct 2153504 GCACTTGATTGTGCCCACGTTCTGTTGGTTGCTCTTGCGATTGCACGCATCCTTGTACAG 2153445 Query 79185 CATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGC 79244 ||||||||| || ||||| ||||| | || | | | ||| | ||| | || Sbjct 2153444 CATGTACGGGACGCCCGTCTCGACCTGCGATTCGATGATGGCAAACCACAGATCCTGAGC 2153385 Query 79245 CCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCG-GTACAACTCGTTGAAAG 79303 | ||| | |||| |||| |||| | | | ||| | || | || Sbjct 2153384 CTTGACCTGACGGATAAACCGGCCCTCCTTCTCGTA-GCCTGTGTAGAGCTTTTCAAACT 2153326 Query 79304 CCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 |||| || | ||| | ||| || || || |||||||||||||||| | ||| || Sbjct 2153325 CCTCTCCCCACGAATCCGACAGTCCGGGACAATCGTGCGGGCACATCAAGCTCCACATCT 2153266 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 ||| | ||| || || |||||| || ||||| | ||| ||||| ||| | ||||| Sbjct 2153265 CGTTCGCCTCGACGCGCTGCATGAACAGATCCGGCACCCAGAGGGCGTAGAACATGTCGC 2153206 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGG 79483 | || | |||||| | ||| |||| ||| |||||||| || | | ||| Sbjct 2153205 GCGCGCGGACCTCCTCCTTGCCGGTGTTCTTCTTCAGATCGAGAAACTCGAACACATCGC 2153146 Query 79484 CGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGA 79543 ||||||||||||| || ||||| ||||||| ||| ||||||| ||||||||||| || Sbjct 2153145 CGTGCCACGGCTCGAGGTAGATCGCGAACGCACCGGGGCGCTTGTTGCCGCCCTGGTCGA 2153086 Query 79544 CGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGT 79603 | || || || ||||||||| | || || ||||| ||||| | |||| || | |||| Sbjct 2153085 CATAGCGCGCGGTGTTGTTGTAGACGCGCAGCATCGGCACCAGCCCGTTGGAAATTCCGT 2153026 Query 79604 TCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG--ATT----CCGA 79657 |||| || ||| || || |||| || || ||||||| ||| || | Sbjct 2153025 TCGTGCCTGCGATGTACGTTCCCTTCGCACGGAT------GCAGTGGACATTCAAGCCAA 2152972 Query 79658 TGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGA 79717 |||| |||| | |||| || || ||||||||| ||| | ||| ||||| |||||||||| Sbjct 2152971 TGCCTCCGGCCGACTTCGAAATCAGCGCGCACTGCTTCAACGTGTCGTAAATGCCCTCGA 2152912 Query 79718 TCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG--GTTGT-TCGTAC 79774 | ||||||| ||| | | ||| |||||| || | ||| || ||||| ||| | Sbjct 2152911 TGCTGTCGTCCGACATCGTCAGCAGAAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCAG 2152852 Query 79775 CGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTC----ATCAGATC 79829 | || || | || |||| ||| ||||| ||| ||| |||| | |||| Sbjct 2152851 CCGC---AAACAATGTAGGCGACGCATGCGTAAAGTAAC-----GCTCCGAGAGTAGATT 2152800 Query 79830 GTACGTCTCCTTGACGCGC-GGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 || ||||| || | ||| || || |||||||| ||||||| || |||||||| Sbjct 2152799 ATAGGTCTCTATGGC-CGCATCGATATCCTCGCCGTGAATGCCGATGGCTACGCGCAT 2152743 >seq10 Length=7496699 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || ||||||||||| || ||||| ||||| |||||||| ||| ||||| ||||||||| Sbjct 495622 GCCATTTTCTGGCTGAAGAAGCGGGGCCTGATGCCGGGTTTGACCTTCTCGAACGAGCTG 495563 Query 60096 ATTTCCCGGGACGAGGGCCTCCA 60118 ||||| || ||||||||||| || Sbjct 495562 ATTTCGCGCGACGAGGGCCTGCA 495540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515399656240