Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 seq8 132 4e-26 seq1 131 1e-25 seq7 84.2 2e-11 >seq3 Length=13649947 Score = 138 bits (152), Expect = 1e-27 Identities = 215/305 (70%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 135460 GACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCA 135519 |||||| ||| |||||||| |||| || | |||| | | || ||||| ||||| Sbjct 8055097 GACGCACGACGACCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCA 8055038 Query 135520 CGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGA 135579 ||| || |||||||||| ||||| || |||||| | || ||| | | | || | || Sbjct 8055037 CGGTTTCCTGCGCATGTACTGGGCGAAGAAGATACTCGAGTGGACCAAAACTCCCGAGGA 8054978 Query 135580 GGCGCTACAACACG-CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAA 135638 ||||| | | ||| |||| | | | || || ||||| | ||||||||||| | | Sbjct 8054977 AGCGCT-CGAGACGGCAATCTATCTCAACGACCGGTACAGCCTGGATGGACGCGACCCGA 8054919 Query 135639 ATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGC 135698 | || ||||| ||||| |||||||| || ||| | |||||||| || ||||||||| Sbjct 8054918 ACGGATACGTCGGTTGCATGTGGTCGATCGCCGGCATTCACGATCAGGGCTGGAAGGAGA 8054859 Query 135699 GCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATG 135758 | || | || || || || | || |||||||| || || |||| |||| ||||| | Sbjct 8054858 GAGAAATCTTCGGTAAAATAAGATACATGAACTACGAAGGATGTAAGCGAAAGTTTAACG 8054799 Query 135759 TAAAT 135763 | ||| Sbjct 8054798 TTAAT 8054794 >seq8 Length=9380469 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 4935973 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 4936032 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || ||||| || || || || Sbjct 4936033 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 4936092 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 4936093 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTACAAC 4936152 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||||||| | ||| |||| |||| |||| |||||| Sbjct 4936153 ATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTGCGTGGTGGC 4936200 >seq1 Length=20238125 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || || ||||| || || ||||| Sbjct 19807025 ATGCAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACGCTTGAGGTCGAGCCGTCG 19807084 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || ||||| || || || || || || |||||| Sbjct 19807085 GACACGATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGAATTCCTCCAGATCAA 19807144 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||||||||| ||||| || | || | ||||| ||||| Sbjct 19807145 CAACGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGCACGCTATCCGACTACAAT 19807204 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || |||| ||||| | || ||||| Sbjct 19807205 ATTCAGAAGGAGTCTACGCTCCACCTGGTGTTGCGACTTCGTGGTGG 19807251 >seq7 Length=10083987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| ||||||||||| | ||||| || || || | | ||||| Sbjct 5670805 ATGCAAATCTTTGTGAAAACTTTGACCGGCAAGACGATTACGCTGGATGTCGTAGCGTCC 5670864 Query 27048 GACTCG--ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 || || |||| || |||| |||||| | || ||| || ||| ||||||| | Sbjct 5670865 GAGACGGTATTG-GA-CATCAAGAGCAAAATTGAGGAGCGAGAGGGTATAGCACCCGACC 5670922 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| || || || ||||||| | | | |||||||||||| Sbjct 5670923 AGCAGCGCATCATCTTCGCGGGAAAGCAGCTGGAAGATGGGCGAATCATTTCCGATTACA 5670982 Query 27166 ACATTCA 27172 | || || Sbjct 5670983 ATATCCA 5670989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434910946585920