Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20atroparvus_20[genbank_20GCA_5F000473505.1_202013-09-30] 1,371 sequences; 224,290,125 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8 132 1e-25 seq1 127 5e-24 seq2 105 2e-17 >seq8 Length=9380469 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 4935976 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 4936035 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || || || || ||||||||||| Sbjct 4936036 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAGCAG 4936095 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || |||| || ||| | Sbjct 4936096 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACGCTGTCCGACTACAACATT 4936155 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 4936156 CAGAAGGAGTCGACCCTCCATCTGGT 4936181 >seq1 Length=20238125 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 19807028 CAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACGCTTGAGGTCGAGCCGTCGGAC 19807087 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| || || || || ||||| ||||| || || ||| Sbjct 19807088 ACGATCGAGAATGTGAAGGCCAAGATCCAAGATAAGGAGGGAATTCCTCCAGATCAACAA 19807147 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||| | || ||||| | || || |||| || || | Sbjct 19807148 CGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGCACGCTATCCGACTACAATATT 19807207 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || || || || ||| |||| Sbjct 19807208 CAGAAGGAGTCTACGCTCCACCTGGTGTTGCGACT 19807242 >seq2 Length=16623535 Score = 105 bits (116), Expect = 2e-17 Identities = 129/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 ||||| || || || || || |||||||||||||||||||| ||||| |||||| Sbjct 2043562 ATCACGCTGGAAGTCGAGCCGTCTGACACCATCGAGAACGTCAAGGCTAAGATCCAGGAC 2043621 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || || || || || || || ||||| || | |||||||| || || ||||| || || Sbjct 2043622 AAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAGGAC 2043681 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| | ||||| |||| || ||| |||| || || || || || || |||| || Sbjct 2043682 GGACGTACTCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTCA-CTTGGTT 2043735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203710055332974