Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq22281 260 1e-64
seq24704 123 3e-23
seq734 116 4e-21
seq9735 113 5e-20
seq3879 104 2e-17
>seq22281
Length=11977
Score = 260 bits (288), Expect = 1e-64
Identities = 315/429 (73%), Gaps = 0/429 (0%)
Strand=Plus/Minus
Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005
|||| || |||||||| ||| |||||||||| || ||||||| || |||||||| ||
Sbjct 3303 TGTTTAATGCCATCGAAACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTAAACT 3244
Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065
||||| || ||| |||| |||||| ||||| | ||||| ||||| |||||||| |
Sbjct 3243 GGATCTCCAGCAAGAAGGCTAACTTCGGTGAGCGTGTCGTGGCTTTCGCCGCCGTCGAAG 3184
Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125
| ||||||| ||||| ||||| |||| || ||||||||||| || ||||| ||||
Sbjct 3183 GTATCTTCTTCAGCGGCAGCTTCGCTTCCATTTTCTGGCTCAAGAAGCGTGGCCTGATGC 3124
Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185
| || || || ||| |||||||| || || | ||||| || ||||| |||||||| |
Sbjct 3123 CGGGACTCACCTTCTCGAACGAGCTGATTTCGCGCGACGAAGGGCTGCACTGCGACTTCG 3064
Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245
|||| || |||||||| || |||||||| ||| || |||||| | ||| ||
Sbjct 3063 CCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGACATTA 3004
Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305
| ||| ||||| | ||||||||| ||| | || | || ||||| || |||
Sbjct 3003 TTCGCGATGCGGTTGTGATCGAGCAGGAGTTCTTGACGAAGGCACTGCCCGTTGACATGC 2944
Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365
| || | || ||||| ||||||||| ||||||||||| || || || | ||||||
Sbjct 2943 TTGGCATGAACTGCGATCTGATGTCGCAGTACATCGAGTTTGTGGCTGATCGTTTGCTGC 2884
Query 117366 TCGAGCTGG 117374
|||||||||
Sbjct 2883 TCGAGCTGG 2875
Score = 188 bits (208), Expect = 7e-43
Identities = 204/265 (77%), Gaps = 4/265 (2%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| ||||| ||||||||||| || |||||||| || ||||||||||| | || ||||
Sbjct 3680 AGGCGGAGGCTTCGTTCTGGACGGTGGAGGAGGTTGATCTGTCCAAGGATATGAAGGACT 3621
Query 116715 GGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773
|||| ||||| ||| | ||| || || ||||| |||||||| ||||| || |||
Sbjct 3620 GGGATGCGCTGAAACCG-AGCGAACGTCACTTCATTTCCCACGTGCTTGCCTTCTTTGCC 3562
Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGT 116832
|| ||| |||||||| |||||||||||||| || || ||| || |||||||| |||||
Sbjct 3561 GCTTCCGATGGCATCGTGAACGAGAATCTGGTGGAACGCTTTAGC-CAGGAGGTACAGGT 3503
Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892
| || || || || |||||||| || ||||| || ||||| ||||||||| || ||
Sbjct 3502 AACGGAAGCACGCTGTTTCTACGGGTTCCAGATTGCGATGGAAAACGTGCACAGCGAGAT 3443
Query 116893 GTATTCGACCCTCATCGACACGTAC 116917
||| || || |||||||| |||
Sbjct 3442 GTACTCACTGCTGATCGACACTTAC 3418
>seq24704
Length=53625
Score = 123 bits (136), Expect = 3e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct 37474 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 37533
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| || | | | | | |||| || || | ||||| ||||| ||||| ||||
Sbjct 37534 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCGGAT 37593
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| || || |||||||| || | ||||| || |||||||
Sbjct 37594 CAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTAC 37653
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||| ||| | || || ||||| |||
Sbjct 37654 AACATCCAGAAAGAGTCTACCCTTCATCTGGTG 37686
>seq734
Length=4884
Score = 116 bits (128), Expect = 4e-21
Identities = 158/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||| ||||| || || || ||||| || || || || ||||||||| |||| || || ||
Sbjct 241 AAATATGCAGATTTTTGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGA-GC 183
Query 40746 CA-CCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803
|| |||| | | || || | |||||| || |||| || || ||||| ||||| |
Sbjct 182 CATCCGATACGATTGAGAATG-TCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCA 124
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|| ||||| || || |||| || || || |||||||| || | |||||||| |||
Sbjct 123 GATCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGAC 64
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| |||||||||||||| |||| || ||||| ||
Sbjct 63 TATAACATCCAGAAGGAATCCACCCTCCATCTGGT 29
>seq9735
Length=15595
Score = 113 bits (124), Expect = 5e-20
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744
|||| ||||| || ||||| ||||||||||| ||||| |||||||| | || |||||
Sbjct 4605 GAAACATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGC 4664
Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
| | |||| | | | | |||| || || | || || || ||||| || | |
Sbjct 4665 CTTCGGACACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAG 4724
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
| ||||| || || |||| || ||||| |||||||| || | ||||| ||| |||||
Sbjct 4725 ATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 4784
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||| || |||||||| | || || ||||| || ||||
Sbjct 4785 ACAATATTCAGAAGGAATCGACCCTTCATCTGGTCCTGCG 4824
>seq3879
Length=3897
Score = 104 bits (114), Expect = 2e-17
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| |||||||| || ||||| |||||||| | || ||||| |||| |
Sbjct 3691 ATGCAGATCTTCGTGAAAACGCTGACTGGCAAGACCATCACTTTGGAGGTCGA-GCCATC 3749
Query 40750 G-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
| ||| | | |||| | |||| || || | ||||| |||||||| || | || |
Sbjct 3750 GGACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATC 3808
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || | |||| ||| || || |||||||| || | || || | ||| ||||
Sbjct 3809 AGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGTACTTTGTCCGATTACA 3868
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||| | || ||||
Sbjct 3869 ACATCCAGAAGGAGTCGACCTTGCA 3893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515023616351440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |