Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq24704 127 1e-24 seq29242 107 1e-18 seq734 104 2e-17 seq9735 98.7 6e-16 seq3879 98.7 6e-16 >seq24704 Length=53625 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||| || | ||| |||||||| ||||||||||||||| Sbjct 37703 CCACCGCGCAGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAC 37644 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || | || |||| |||||| || ||||| || || |||||||| || | |||| Sbjct 37643 AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 37584 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | |||| ||| | | ||||| Sbjct 37583 -ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 37525 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || || ||||| ||||| || |||||||||||| Sbjct 37524 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATC 37476 >seq29242 Length=5648 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| |||||||| | || ||||| || | || ||| ||||| ||||| ||||| | Sbjct 5414 ATCCACCGCGCAGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCG 5473 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 |||| ||| | || |||| |||||| || || || || || |||||||| || | Sbjct 5474 ACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTG 5533 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | |||||| || ||||| ||| | || | |||| ||||| | || | Sbjct 5534 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAA 5593 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||| || ||||| || ||||||||||| |||||||| Sbjct 5594 CCTCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642 >seq734 Length=4884 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| || | || ||| ||||| ||||| ||||| ||| Sbjct 11 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 70 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || || || || || |||||||| || || Sbjct 71 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 130 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | |||| ||||| | || || Sbjct 131 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACC 190 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || ||||| |||||||||||||| |||||||| Sbjct 191 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 237 >seq9735 Length=15595 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| ||||| || | || ||| ||||| || ||||||||||| Sbjct 4836 CCACCACGAAGTCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAG 4777 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || || |||||||| || || Sbjct 4776 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 4717 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | |||| || | | ||||| Sbjct 4716 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 4657 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| |||||||| || |||||||| Sbjct 4656 TCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4610 >seq3879 Length=3897 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| ||||||| ||| | || |||| |||||| || ||||| Sbjct 3881 TCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGCTGCTTACCGGCGAAG 3822 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | |||||||| || || | || ||||||||| ||||| ||| | | Sbjct 3821 ATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 3762 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | | ||||| |||| |||||||| ||||| || || |||||||| Sbjct 3761 TCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGCGTTTTCACG 3702 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 3701 AAGATCTGCATC 3690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322952423884640