Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq25975 396 3e-105 seq22281 140 4e-28 >seq25975 Length=7706 Score = 396 bits (438), Expect = 3e-105 Identities = 1210/1852 (65%), Gaps = 34/1852 (2%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || || || | ||| ||||| || ||||| | ||| | |||| ||||| ||| Sbjct 3677 GCCGGCTTGGTGCGCAAATAATACATGCCAGTTTTCAAACCCATTTTCCACCCGTAGAAA 3618 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||| || || || | || || || | || ||||| | ||||| Sbjct 3617 TGGATCGACGTCAGCTTACCGTAGTTGGGTTCCGCGACGTGAATATTGAACGATTGCGAC 3558 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || || | || || |||||||| ||| ||| || || || ||| Sbjct 3557 TGATCGATAAACGCACCGCGATCCGCTGCCATTTTGATGCACGTTTTCACTGAGATCTCC 3498 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTT-CTGGAAGGTTTGTAT--TCTGAATGGA 62302 || | ||||| |||| |||| ||| |||| | ||| || | || | ||||| || Sbjct 3497 CATACCGTTTTGTAAAGATCGCG-AATTTCTTGCGGGATAGTCTCAATCTTTTGAATTGA 3439 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| | || |||| ||||| || || || ||||||| | | ||| | Sbjct 3438 TCCATTGTTCGACAGAATCTCGTTCTTCATATCGAGATCCCATAATCCCATGTTGGTCAG 3379 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | |||||||| |||| || || || || || || || | || | | | |||| Sbjct 3378 ATCCTGCAGGAGATGGTGGTTTACCACCTGAAACTCACCCGATAGCACGCGTCTATTGTA 3319 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 | || || || || || | ||| ||||| || || | |||||| || || || || Sbjct 3318 TACGTTCGACGTGTAGGGCTCGAACGATTCATTGTTGCCAAGAATTTGGGCTGTCGAAGC 3259 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 |||||||| || |||| || | ||| | | ||||| | ||||| || || Sbjct 3258 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGGATACCGTGCTTGGCTATTTTTTCCTT 3199 Query 62543 TAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAAT 62602 | | ||| ||||| || || | ||| | || || || || Sbjct 3198 CAACTCCGACCAGTTCCACAGCTCAGTCGGCTCCTTGTTCCACATTTCGTACTGCAGGAT 3139 Query 62603 ACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTT 62661 || ||||| | | || | ||| | || || || || ||||| || | || | | Sbjct 3138 GCCCTTACTCACCGGACTACCCT-CGTACGTTTCGTACGGTCCATCACGAGCGGCCAACT 3080 Query 62662 TACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTT 62721 ||| || || || | ||| ||| |||| |||||||| || || | | || || | || Sbjct 3079 CACAGCTAGCTTCCAGTGCTCCGAAATAGATGGTTTCGAATATTTGTTGGTTCAGCTTTT 3020 Query 62722 GTGCTTCCGGGCTATCAAATGGATAAT---TTAAGAGAATAAACGCGTCCGCTAATCCTT 62778 | || ||| ||| || | ||||| |||||| | ||||| || || | ||| | Sbjct 3019 GAGCCTCCTCGCTTTCGTACGGATAGCGCATTAAGA---TGAACGCATCGGCCATTCCCT 2963 Query 62779 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62838 ||||||| |||||||| |||| || | | | || ||| | ||| || || | ||||| Sbjct 2962 GAACACCTATACCGATGGGTCGGTGGCGCATGTTGGAGCGCTTAGCCTCCGGGACAGGAT 2903 Query 62839 AATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCT 62895 | || || | ||| || || || || ||||| | | || || ||| | | || |||| Sbjct 2902 AGTAGTTGACATCAATGATCTTGTTCAGATTGCGCGTTACTAT--CTTAG-CGACTTCCT 2846 Query 62896 TCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATG 62952 |||| ||| ||||||| | |||| |||||||||||||||| |||| || | Sbjct 2845 TCAGCTTGGTAAAATCATACGTTTTATCTTGCTTTACAAACATGTTCAAAGCAATCGAGG 2786 Query 62953 CCAGATTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAG 63010 ||||||| ||||| ||||| || | | || || ||| | | || || ||||| || Sbjct 2785 CCAGATTGCACACCGCTACTTCGTC--CTTCGACGAATACTCCACAATTTCGGTGCACAG 2728 Query 63011 ATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 63070 || ||| || || ||||| | ||| || |||||||| || || || |||||||| Sbjct 2727 GTTGGAACATTTAATGGTTCCGACATTCTGCTGATTACTTTTACGATTGCATGCATCCTT 2668 Query 63071 ATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 63130 || || ||| |||| || ||||| | ||| || || || ||||| ||| | | | Sbjct 2667 GTACAGCATGTATGGTACGCCCGTTTCCACCTGCGACTCGATGATCGCGAACCACAAGTC 2608 Query 63131 TCGAGCCTTTAT-TATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 | || || | | | || | | | | ||| | ||||| || |||| | Sbjct 2607 CTGTGCTTTGACCTGTCGAATAA-AGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCT 2549 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 ||||||| || ||||| || ||| | ||||| || | |||||||||| || Sbjct 2548 CGAACTCTTCACCCCACGTATCTGCCAGACCGGGACAATCGTGTGGACACATCAGGCTCC 2489 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 || | | | ||| ||| || ||||| || ||||| || ||||| ||||| || | Sbjct 2488 ACATTTCATTCGCCTCCACACGCTTCATGAACAGATCCGGTATCCACAGAGCGTAGAACA 2429 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 || | | | || || || || || || || || |||||||| ||| | | | Sbjct 2428 TGTCGCGGGCACGGACCTCTTCCTTGCCAGTGTTTTTCTTTAGATCGAGAAACTCGAATA 2369 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 |||| |||||||||||||| || ||||| | ||||||||| |||||| || |||| Sbjct 2368 CATCACCATGCCACGGTTCCAGATAGATGGCGAATGCTCCAGGCCTTTTGTTGCCGCCCT 2309 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 |||| | ||| | || || || || || || | || ||| || | | |||||||| | Sbjct 2308 GATCCACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGCACCAATCCGTTTGAAA 2249 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACC 63547 |||| || || |||||||| || ||| | || || || | | | || | | || Sbjct 2248 TACCGTTTGTGCCGGAGATGTATGTTCCCTTCGCGCGGATGCAGTGCACGTTCA--GCCC 2191 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || ||| || || || | || ||| | || | || || || || || || Sbjct 2190 AATGCCACCGGCCGACTTTGAAATCAGCGCACATTGCTTCAGAGTATCGTAAATACCCTC 2131 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 ||||||||||| |||| | || ||||||||| ||| | || | || || | Sbjct 2130 AATGCTATCATCAGACATGGTCAGCAGAAAACAGGAAGAGAGCTGAGGCCGCTGCGTAGC 2071 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 ||| ||| | ||| || || ||||| ||||| | |||||| || ||||| ||||| Sbjct 2070 CGCTGCAAACATGGTCGGTGAGGCGTGGGTAAAGTAGCGTTCAGACAGCAGATTATACGT 2011 Query 63728 CTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 || || |||| || || | || | || || || | ||||| ||||| | ||| | Sbjct 2010 TTCGATCGCTGCATCGATGTTTTCACCG-TGGATGCCGATAGCGACGCGCATCAGCATAT 1952 Query 63787 GCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63846 |||| |||| ||||||||||| ||||| || | |||||| ||| |||||| |||| Sbjct 1951 GCTGTGGTCGCTCAACAATTTTACCCTTTATCTTGAGCAAGTATGATCGTTCCAATGTTT 1892 Query 63847 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 |||| || ||||||||||| |||||| || ||||||||||| |||| || Sbjct 1891 TAAAGCCGAAATAGTTGTACCCAAAGTCGCGATCGTAAATAATTGCCGAGTT 1840 >seq22281 Length=11977 Score = 140 bits (154), Expect = 4e-28 Identities = 188/259 (73%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || ||||| ||||||||||| || ||||| | ||| | ||||| Sbjct 3048 TTGAACATCAGGCAGGCGAAGTCGCAGTGCAGCCCTTCGTCGCGCGAAATCAGCTCGTTC 3107 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||| ||||| ||||||||||| || ||||| || ||||||||||| Sbjct 3108 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGAAGCGAAGCTG 3167 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| ||||| || || || || || | | | ||| || | || Sbjct 3168 CCGCTGAAGAAGATACCTTCGACGGCGGCGAAAGCCACGACACGCTCACCGAAGTTAGC- 3226 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| ||| | ||||| || |||||||| || || || |||| || Sbjct 3227 CT-TCTTGCTGGAGATCCAGTTTAGCGCCCAGTCAGCCTTCTTCTTCACGCACGGCAGCG 3285 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| ||||||||||| || Sbjct 3286 TTTCGATGGCATTAAACAG 3304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629578513366320