Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq24704 100 3e-16 seq9735 96.9 3e-15 seq29242 86.0 6e-12 >seq24704 Length=53625 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| ||||||||||| || ||||| || ||| || |||| || | || || ||||| Sbjct 37679 TGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCCTCCAGCTG 37621 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||| || |||||||||| |||||||| || || || || || ||||| ||| || Sbjct 37620 CTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGGATCTT 37561 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | || || | |||||| ||||||| ||| | ||||| || || Sbjct 37560 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGT 37501 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 37500 GAGGGTTTTGACGAAGATCTGCAT 37477 >seq9735 Length=15595 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || || ||||| || || ||| | |||| || || ||||| Sbjct 4812 TGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGC 4753 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||||||||| |||||||| ||||| |||||||| || || ||| || Sbjct 4752 TTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTTG 4693 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | ||||| ||||||| || | ||||||||||| Sbjct 4692 GCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTG 4633 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | |||||| ||||| || ||||| Sbjct 4632 AGCGTTTTCACGAAAATCTGCAT 4610 >seq29242 Length=5648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || ||||||||||| || || |||| ||||| ||||| || || Sbjct 5446 GTGGATTCCTTCTGAATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 5505 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||||||| |||||||| || || || || || || || ||| | || | || Sbjct 5506 GCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATC-CTGAATCTTGGCCTT 5564 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| ||||| ||||| | || | ||||| ||||||| ||| Sbjct 5565 GACATTCTCAATCGTATCGGATGGCTCAACCTCGAGAGTGATGGTCTTTCCGGTCAGCGT 5624 Query 139747 TTTTACGAATATTTGCATA 139765 ||| || || || |||||| Sbjct 5625 TTTCACAAAAATCTGCATA 5643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495875687904800