Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq734 86.0 5e-12 seq9735 84.2 2e-11 >seq734 Length=4884 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||| ||||| ||| ||||| || | || || || ||| Sbjct 11 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 70 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || || |||||||| |||| ||||| ||||| | || Sbjct 71 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 130 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| || | ||||| | ||| || ||| | ||| || Sbjct 131 ATTCCCTCCTTATC-CTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAAC 189 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || |||||||| ||||||||||||||||| ||||| || Sbjct 190 CTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATATT 240 >seq9735 Length=15595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/236 (68%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || || ||||| |||| | |||| ||| | || ||||| || | |||||| ||| Sbjct 4839 TCACCACCACGAAGTCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCG 4780 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 || | || || | || |||| || ||||||||||| |||| ||||| ||||| | Sbjct 4779 GAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGA 4720 Query 43000 GGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 || | ||||| || || |||| | || || | | | ||||| || |||| Sbjct 4719 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 4660 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCT 43114 || || | || || || || ||||| || |||||||| ||||| ||||| ||||| Sbjct 4659 ACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGTTTCT 4604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381228446649402