Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq25975 394 1e-104 seq22281 118 1e-21 >seq25975 Length=7706 Score = 394 bits (436), Expect = 1e-104 Identities = 1233/1890 (65%), Gaps = 50/1890 (3%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| |||||||| || | | || | || || || | ||| |||||||| Sbjct 3707 TTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTGCGCAAATAATACATGCCA 3648 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| | ||| | |||| ||||| ||||| || ||| || || ||| | || Sbjct 3647 GTTTTCAAACCCATTTTCCACCCGTAGAAATGGATCGACGTCAGCTTACCGTAGTTGGGT 3588 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || || | ||||||||| | ||| || |||||||| || || || | || || ||| Sbjct 3587 TCCGCGACGTGAATATTGAACGATTGCGACTGATCGATAAACGCACCGCGATCCGCTGCC 3528 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 71030 ||||| ||| ||| || || || ||||| | ||||| |||| |||| ||| || Sbjct 3527 ATTTTGATGCACGTTTTCACTGAGATCTCCCATACCGTTTTGTAAAGATCGCG-AATTTC 3469 Query 71031 TT-CTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 || | ||| || | || | ||||| |||||| | | | |||| || || || Sbjct 3468 TTGCGGGATAGTCTCAATCTTTTGAATTGATCCATTGTTCGACAGAATCTCGTTCTTCAT 3409 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTG 71147 || || ||||||| | | ||| | | | |||||||| | || || || || Sbjct 3408 ATCGAGATCCCATAATCCCATGTTGGTCAGATCCTGCAGGAGATGGTGGTTTACCACCTG 3349 Query 71148 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTC 71207 ||| || || || | || | | | |||| | || || || || || | || || Sbjct 3348 AAACTCACCCGATAGCACGCGTCTATTGTATACGTTCGACGTGTAGGGCTCGAACGATTC 3289 Query 71208 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATT 71267 ||| || || | |||||| || || || || |||||||| || |||| || || ||| Sbjct 3288 ATTGTTGCCAAGAATTTGGGCTGTCGAAGCCGTCGGCATCGGGGCCAACAGCAGCGAATT 3229 Query 71268 TCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCC---CAATTCCAAAGATCC 71322 | | ||| ||| | || ||||| || || | | ||| || ||||| || || Sbjct 3228 GCGGATACC--GTGCTTGGCTATTTTTTCCTTCA---ACTCCGACCAGTTCCACAGCTCA 3174 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGC 71381 | || | ||||| ||||| | || | | ||| | Sbjct 3173 GTCGGCTCCTTGTTCCACATTTCGTACTGCAGGATGCCCTTACTCACCGGACTACCCT-C 3115 Query 71382 ATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATA 71441 || || ||||| ||||| || |||| | ||||| || || || | |||||| | Sbjct 3114 GTACGTTTCGTACGGTCCATCACGAGCGGCCAACTCACAGCTAGCTTCCAGTGCTCCGAA 3055 Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATA 71501 ||| ||||||||||| || | | || || | ||| || ||| ||| || | ||||| Sbjct 3054 ATAGATGGTTTCGAATATTTGTTGGTTCAGCTTTTGAGCCTCCTCGCTTTCGTACGGATA 2995 Query 71502 AT---TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTG 71558 |||||| | ||||| || || | ||| ||||| || |||||||| |||| ||| Sbjct 2994 GCGCATTAAGA---TGAACGCATCGGCCATTCCCTGAACACCTATACCGATGGGTCGGTG 2938 Query 71559 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 71618 | | | || || | ||| || || | |||||| || || | ||| || || || || Sbjct 2937 GCGCATGTTGGAGCGCTTAGCCTCCGGGACAGGATAGTAGTTGACATCAATGATCTTGTT 2878 Query 71619 GAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 ||||| | | ||||| ||| | | || ||||| || ||| ||||||| | | Sbjct 2877 CAGATTGCGCGTTACTAT--CTTAG-CGACTTCCTTCAGCTTGGTAAAATCATACGTTTT 2821 Query 71676 ATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 |||| ||||||||| |||||| |||| || |||||||| || || ||||| || | Sbjct 2820 ATCTTGCTTTACAAACATGTTCAAAGCAATCGAGGCCAGATTGCACACCGCTACTTCGTC 2761 Query 71733 AGCATCGGC--ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | ||| | ||| | | |||||| ||||| || || ||| || |||||||| | | Sbjct 2760 --CTTCGACGAATACTCCACAATTTCGGTGCACAGGTTGGAACATTTAATGGTTCCGACA 2703 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 || || |||||||| || || || |||||||| || || || | || || ||| Sbjct 2702 TTCTGCTGATTACTTTTACGATTGCATGCATCCTTGTACAGCATGTATGGTACGCCCGTT 2643 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTAT 71910 || | ||| || || || ||||| ||| | | | | || || | || || Sbjct 2642 TCCACCTGCGACTCGATGATCGCGAACCACAAGTCCTGTGCTTTGACCTG--TCGAATAA 2585 Query 71911 CTCTTTTCTCTTTC--GTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT 71966 | ||||||| ||| ||||| | || |||||||| || ||||| | || Sbjct 2584 AGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTC--TCGAACTCTTCACCCCACGTATC 2527 Query 71967 GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCG 72026 | | || ||||| || | |||||||||| |||| | ||| | | || || Sbjct 2526 TGCCAGACCGGGACAATCGTGTGGACACATCAGGCTCCACATTTCATTCGCCTCCACACG 2467 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 ||||| || ||||| || ||||| ||||| || | || | || | ||| || Sbjct 2466 CTTCATGAACAGATCCGGTATCCACAGAGCGTAGAACATGTCGCGGGCACGGACCTCTTC 2407 Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 72146 || || || || || || |||||||| ||| | | | |||| |||||||||||||| Sbjct 2406 CTTGCCAGTGTTTTTCTTTAGATCGAGAAACTCGAATACATCACCATGCCACGGTTCCAG 2347 Query 72147 GTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 72206 || ||||| | |||| |||| |||||| || |||||||| | ||| | || || || Sbjct 2346 ATAGATGGCGAATGCTCCAGGCCTTTTGTTGCCGCCCTGATCCACGTACCGTGCCGTATT 2287 Query 72207 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266 || || || | || ||| || | | || || || ||| || || |||||||| || Sbjct 2286 GTTGTACACGCGCAGCATCGGCACCAATCCGTTTGAAATACCGTTTGTGCCGGAGATGTA 2227 Query 72267 GCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 72324 |||| | || || || | ||| || | | || || || || ||| || || Sbjct 2226 TGTTCCCTTCGCGCGGATGCAGTGCACGTTCA--GCCCAATGCCACCGGCCGACTTTGAA 2169 Query 72325 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 72384 || | || ||| | || | ||||| || || ||||| || |||||||| |||| | Sbjct 2168 ATCAGCGCACATTGCTTCAGAGTATCGTAAATACCCTCAATGCTATCATCAGACATGGTC 2109 Query 72385 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 72444 || ||||||||| ||| | || | || || |||| ||| | ||| || || Sbjct 2108 AGCAGAAAACAGGAAGAGAGCTGAGGCCGCTGCGTAGCCGCTGCAAACATGGTCGGTGAG 2049 Query 72445 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 72504 ||||| ||||| | ||||||||| ||||| ||||| || || |||| || || | Sbjct 2048 GCGTGGGTAAAGTAGCGTTCAGACAGCAGATTATACGTTTCGATCGCTGCATCGATGTTT 1989 Query 72505 -CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTT 72563 || | || || || | ||||| ||||| | ||||||||| |||| ||||| || || Sbjct 1988 TCACCG-TGGATGCCGATAGCGACGCGCATCAGCATATGCTGTGGTCGCTCAACAATTTT 1930 Query 72564 GTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 72623 ||||| || | |||||| ||| |||||| |||||||| || ||||||||||| Sbjct 1929 ACCCTTTATCTTGAGCAAGTATGATCGTTCCAATGTTTTAAAGCCGAAATAGTTGTACCC 1870 Query 72624 AAAGTCTCGTTCGTAAATAATAACCGAATT 72653 |||||| || ||||||||||| |||| || Sbjct 1869 AAAGTCGCGATCGTAAATAATTGCCGAGTT 1840 >seq22281 Length=11977 Score = 118 bits (130), Expect = 1e-21 Identities = 183/259 (71%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| || ||||| ||||||||||| || || || | ||| | ||||| Sbjct 3048 TTGAACATCAGGCAGGCGAAGTCGCAGTGCAGCCCTTCGTCGCGCGAAATCAGCTCGTTC 3107 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || |||||||| ||||| ||||||||||| || ||||| || || || || || Sbjct 3108 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGAAGCGAAGCTG 3167 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||||| ||||| || || || || || | | | ||| || | || Sbjct 3168 CCGCTGAAGAAGATACCTTCGACGGCGGCGAAAGCCACGACACGCTCACCGAAGTTAGC- 3226 Query 42233 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 || || || ||||| ||| | ||||| || |||||||| || || || |||| || Sbjct 3227 CT-TCTTGCTGGAGATCCAGTTTAGCGCCCAGTCAGCCTTCTTCTTCACGCACGGCAGCG 3285 Query 42288 TTTCTATGGCATTAAAGAG 42306 |||| ||||||||||| || Sbjct 3286 TTTCGATGGCATTAAACAG 3304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670884427170440