Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq29242 154 3e-32
seq9735 150 4e-31
seq734 150 4e-31
seq14204 134 3e-26
>seq29242
Length=5648
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || ||||| |||||||| |||||||| || || || | || ||
Sbjct 5430 AAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGACAGGGTGCGGCCATC 5489
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || ||||| ||||| || || | ||| ||||| || || ||||| || |||||
Sbjct 5490 TTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATC 5549
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| || || ||||| || | |||||| || || ||||| || || || ||
Sbjct 5550 CTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGAGTGATGGT 5609
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || || ||||| ||||| ||||||||
Sbjct 5610 CTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642
>seq9735
Length=15595
Score = 150 bits (166), Expect = 4e-31
Identities = 166/220 (75%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || ||||| ||||||||||| ||||| || ||||| | ||| ||
Sbjct 4821 AGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACCATCC 4762
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || ||||| || || | ||| ||||| ||||| || ||||| ||||||
Sbjct 4761 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCC 4702
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| || || ||||| || | || || ||| || ||||| ||||| || |||
Sbjct 4701 TGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTC 4642
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGTGT 104566
|| || || || ||||| || || |||||||| ||| |||
Sbjct 4641 TTGCCGGTGAGCGTTTTCACGAAAATCTGCATGTTTCTGT 4602
>seq734
Length=4884
Score = 150 bits (166), Expect = 4e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || ||||| ||||| || |||||||| || || || | || ||
Sbjct 25 AAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATC 84
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || ||||| ||||| || || | ||| ||||| || || ||||| || |||||
Sbjct 85 TTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATC 144
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| || || ||||| || | |||||| || || ||||| || || || ||
Sbjct 145 CTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGGGTGATGGT 204
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| || || || ||||| ||||| |||||||| ||
Sbjct 205 CTTTCCGGTCAGAGTTTTCACAAAAATCTGCATATT 240
>seq14204
Length=1823
Score = 134 bits (148), Expect = 3e-26
Identities = 221/316 (70%), Gaps = 2/316 (1%)
Strand=Plus/Minus
Query 238572 GCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAA 238631
||| |||| || || || ||||| || |||||| | || ||||| | |||||
Sbjct 436 GCCAAAACGCATGACGATCTGTGGAACTCAGCCCAGCTGCAGATGGTGAAGGAGGGCAAG 377
Query 238632 ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCA 238691
||||| | ||| | || ||||| ||||| |||||||| || || ||||| | ||| ||
Sbjct 376 ATGCACGGCTTCCTGCGGATGTACTGGGCCAAAAAGATCCTGGAGTGGACGAAATCGCCC 317
Query 238692 AAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGAACTCGACGGTACGGA 238750
||||||| ||| || | || || |||||||||||| ||| || || || ||
Sbjct 316 GAGGAAGCGCTT-GAGACAGCCATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGA 258
Query 238751 TCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTC 238810
||| ||||| ||||| ||||| |||||||| || || | |||||| || |||
Sbjct 257 TCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCCGGCATTCACGATCAGGGTTGGAA 198
Query 238811 TGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATT 238870
||| | || |||||||| || | |||||||| ||||| ||| |||| |||||
Sbjct 197 GGAGCGTGAAATCTTTGGAAAGATTCGGTACATGAACTATGACGGATGTAAGCGTAAATT 138
Query 238871 TGATGTAAATGCTTTT 238886
| | || ||||| |||
Sbjct 137 TAACGTGAATGCCTTT 122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150950387644252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |