Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq29242 154 3e-32 seq9735 150 4e-31 seq734 150 4e-31 seq14204 134 3e-26 >seq29242 Length=5648 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| |||||||| |||||||| || || || | || || Sbjct 5430 AAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGACAGGGTGCGGCCATC 5489 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| ||||| || || | ||| ||||| || || ||||| || ||||| Sbjct 5490 TTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATC 5549 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | |||||| || || ||||| || || || || Sbjct 5550 CTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGAGTGATGGT 5609 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| ||||| |||||||| Sbjct 5610 CTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642 >seq9735 Length=15595 Score = 150 bits (166), Expect = 4e-31 Identities = 166/220 (75%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| ||||||||||| ||||| || ||||| | ||| || Sbjct 4821 AGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACCATCC 4762 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| ||||| ||||| || ||||| |||||| Sbjct 4761 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCC 4702 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | || || ||| || ||||| ||||| || ||| Sbjct 4701 TGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTC 4642 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGTGT 104566 || || || || ||||| || || |||||||| ||| ||| Sbjct 4641 TTGCCGGTGAGCGTTTTCACGAAAATCTGCATGTTTCTGT 4602 >seq734 Length=4884 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| || |||||||| || || || | || || Sbjct 25 AAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATC 84 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| ||||| || || | ||| ||||| || || ||||| || ||||| Sbjct 85 TTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATC 144 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | |||||| || || ||||| || || || || Sbjct 145 CTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGGGTGATGGT 204 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || || ||||| ||||| |||||||| || Sbjct 205 CTTTCCGGTCAGAGTTTTCACAAAAATCTGCATATT 240 >seq14204 Length=1823 Score = 134 bits (148), Expect = 3e-26 Identities = 221/316 (70%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 238572 GCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAA 238631 ||| |||| || || || ||||| || |||||| | || ||||| | ||||| Sbjct 436 GCCAAAACGCATGACGATCTGTGGAACTCAGCCCAGCTGCAGATGGTGAAGGAGGGCAAG 377 Query 238632 ATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCA 238691 ||||| | ||| | || ||||| ||||| |||||||| || || ||||| | ||| || Sbjct 376 ATGCACGGCTTCCTGCGGATGTACTGGGCCAAAAAGATCCTGGAGTGGACGAAATCGCCC 317 Query 238692 AAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGAACTCGACGGTACGGA 238750 ||||||| ||| || | || || |||||||||||| ||| || || || || Sbjct 316 GAGGAAGCGCTT-GAGACAGCCATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGA 258 Query 238751 TCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTC 238810 ||| ||||| ||||| ||||| |||||||| || || | |||||| || ||| Sbjct 257 TCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCCGGCATTCACGATCAGGGTTGGAA 198 Query 238811 TGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATT 238870 ||| | || |||||||| || | |||||||| ||||| ||| |||| ||||| Sbjct 197 GGAGCGTGAAATCTTTGGAAAGATTCGGTACATGAACTATGACGGATGTAAGCGTAAATT 138 Query 238871 TGATGTAAATGCTTTT 238886 | | || ||||| ||| Sbjct 137 TAACGTGAATGCCTTT 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150950387644252