Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq24704 107 2e-18 seq29242 95.1 1e-14 seq734 93.3 4e-14 seq9735 87.8 2e-12 seq3879 87.8 2e-12 >seq24704 Length=53625 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || ||| || || |||||||| || | Sbjct 37704 ACCACCGCGCAGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGA 37645 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||||||| || | || | ||||||||||||| ||| Sbjct 37644 CAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGG 37585 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || ||| ||| | | | | || ||||| | | ||| Sbjct 37584 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 37525 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 37524 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 37473 >seq29242 Length=5648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | || | ||| || ||| ||||| |||||||| || || | | Sbjct 5416 CCACCGCGCAGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGAC 5475 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | || ||||||||||| ||| | | || | |||||||||||| || Sbjct 5476 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 5535 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| ||| ||| || ||||| | | | || ||||||| | ||| | Sbjct 5536 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACC 5595 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || ||||| || |||||||||||||||||||| Sbjct 5596 TCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642 >seq734 Length=4884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||| || ||||| || || | || || | || |||||||| Sbjct 34 ATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTG 93 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | |||||||||||| || | | ||||| ||| ||| || Sbjct 94 CTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTT 153 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | | || ||||||| | ||| ||||| || ||||| || ||||| Sbjct 154 GGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGT 213 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||||||||||||||| Sbjct 214 CAGAGTTTTCACAAAAATCTGCAT 237 >seq9735 Length=15595 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCT 48581 |||||| || ||||| ||||| ||||| || | | | || || | |||||||||| Sbjct 4813 ATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTG-CGACCATCCTCCAGCT 4755 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| | | || | |||||||||||| || | | |||||| ||| || | Sbjct 4754 GCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGATCT 4695 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | | || || || | || ||| ||| | ||| ||||| || |||| Sbjct 4694 TGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 4635 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| |||||||| ||||||||||| Sbjct 4634 TGAGCGTTTTCACGAAAATCTGCAT 4610 >seq3879 Length=3897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| | ||| || | |||||||||||||||||| || | Sbjct 3882 CTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGCTGCTTACCGGCGAA 3823 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||||||||| || | | ||||||||| || || ||| | Sbjct 3822 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 3763 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | | ||| ||| | || ||||| || || || || |||||||| Sbjct 3762 CTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGCGTTTTCAC 3703 Query 48715 AAAAATCTGCATCGTG 48730 || ||||||||| || Sbjct 3702 GAAGATCTGCATCCTG 3687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421095285584369