Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3879 136 4e-27 seq9735 113 4e-20 seq734 107 2e-18 seq29242 104 2e-17 seq24704 86.0 6e-12 >seq3879 Length=3897 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAG 94860 ||||||||| || || ||||| || | ||| |||||| || ||| ||||||||| Sbjct 3897 CAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAG 3838 Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 ||| || ||| | ||||| || | ||||||||||||||||| || || ||||| | || Sbjct 3837 CTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGAT 3778 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 || ||||| ||| ||| ||||| | | ||||| || | |||||||| || || Sbjct 3777 CTTGGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCC 3718 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||| || |||||||| ||||||||||| || Sbjct 3717 AGTCAGCGTTTTCACGAAGATCTGCATCCT 3688 >seq9735 Length=15595 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||||| |||| || | || |||||||| || | || || ||| | |||| Sbjct 4825 TCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACC 4766 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| ||||||| | | ||||||||||||||||| ||||| || Sbjct 4765 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTT 4706 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 4705 ATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 4646 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 4645 GGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGTTT 4606 >seq734 Length=4884 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || || ||| | ||| |||||||| |||||| Sbjct 41 GTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 100 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||||||||| || || || || || || | ||| || |||||| Sbjct 101 GCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTG 160 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || || | | || || || | |||||||| ||||| || |||||| Sbjct 161 ACATTCTCAATCGTATCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTT 220 Query 94991 TTCACAAAGATCTGCAT 95007 |||||||| |||||||| Sbjct 221 TTCACAAAAATCTGCAT 237 >seq29242 Length=5648 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || || ||| | ||| |||||||| |||||| Sbjct 5446 GTGGATTCCTTCTGAATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 5505 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||||||||| || || || || || || | ||| || |||||| Sbjct 5506 GCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTG 5565 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || || | | || || || | |||||||| ||||| || || ||| Sbjct 5566 ACATTCTCAATCGTATCGGATGGCTCAACCTCGAGAGTGATGGTCTTTCCGGTCAGCGTT 5625 Query 94991 TTCACAAAGATCTGCAT 95007 |||||||| |||||||| Sbjct 5626 TTCACAAAAATCTGCAT 5642 >seq24704 Length=53625 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | ||||| || || || | ||| || ||| || ||| |||||| Sbjct 37686 CACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTC 37627 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | |||||||| || || || || || ||||| | Sbjct 37626 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCCTG 37567 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| || || | | | ||||| |||| || ||||| || Sbjct 37566 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 37507 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||||||||| Sbjct 37506 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 37477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448121023056840