Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq23068 201 2e-47 seq2608 156 7e-34 seq4417 104 4e-18 >seq23068 Length=11117 Score = 201 bits (222), Expect = 2e-47 Identities = 207/268 (77%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| || | | | || ||||||||||| || || |||||||| || || Sbjct 3515 GCGAAGCGTCATCGTAAGGTGT-TGCGCGATAACATCCAGGGCATTACCAAGCCCGCCAT 3573 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| |||||||||||||| |||||| | || ||| || |||| ||||||| Sbjct 3574 TCGCCGTTTGGCCCGTCGTGGTGGAGTGAAGCGTATTTCCGGACTGATCTACGAAGAGAC 3633 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | |||||| ||| ||| |||| ||||||| | || ||||| Sbjct 3634 GCGTGGTGTGCTGAAGGTGTTCCTCGAGAACGTGATCCGTGATGCTGTGACGTACACCGA 3693 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || ||||| |||||| |||||||| | ||||| || ||||| || || || Sbjct 3694 GCATGCCAAGCGGAAGACCGTCACCGCCATGGATGTAGTCTACGCGTTGAAGCGCCAGGG 3753 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| ||| ||||| Sbjct 3754 CCGTACTCTGTACGGTTTCGGAGGTTAA 3781 >seq2608 Length=4260 Score = 156 bits (172), Expect = 7e-34 Identities = 197/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | | | || || ||||||||||| || || |||||||| || || Sbjct 4185 GCCAAGCGTCATCGTA-AGGTGTTGCGCGATAACATCCAGGGTATTACCAAGCCCGCCAT 4127 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || |||||| |||| || || |||| || |||| Sbjct 4126 CCGTCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 4067 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| | | ||| || | || || | ||| ||||| Sbjct 4066 GCGCGGTGTGCTGAAGGTGTTCCTGGAAAACGTGATTCGCGACGCGGTTACCTACACCGA 4007 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | |||||| | || || || |||| || || || Sbjct 4006 GCACGCCAAGCGCAAGACGGTCACGGCGATGGATGTGGTGTACGCTCTGAAGCGCCAGGG 3947 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 3946 TCGTACTCTGTACGGTTTCGGAGGTTAA 3919 >seq4417 Length=3706 Score = 104 bits (114), Expect = 4e-18 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| || | | | || |||||||| || || || |||||||| || || Sbjct 3563 GCCAAGCGTCATCGTAAGGTGT-TGCGCGATAACATTCAGGGTATTACCAAGCCCGCCAT 3621 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || || |||||| |||| || || |||| || |||| Sbjct 3622 CCGTCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 3681 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 || | ||| ||||| | ||||| Sbjct 3682 GCGCGGTGTGCTGAAGGTGTTCCT 3705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79047433410717