Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq25429 170 1e-37 seq24704 96.9 2e-15 seq9735 95.1 8e-15 >seq25429 Length=8147 Score = 170 bits (188), Expect = 1e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| ||||||| ||||| ||||| | ||| |||||||| ||||| ||||| Sbjct 6046 ATGGCTACCGTGAACGTGAATCGCAATGTTACCGACATCTTCTACCGTTACAAGATGCCC 5987 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| || ||||| ||||||||||||||||| || || || || || || |||||| Sbjct 5986 CGCATCAATGCAAAGGTAGAGGGTAAGGGAAACGGCATCAAGACAGTGATCGTGAACATG 5927 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| || ||| |||| || ||||||||||| ||||| || || || || ||| Sbjct 5926 GCAGAAGTGGCCCGTGCGATCGGTCGTCCTGCCACCTATCCGACCAAGTACTTTGGCTGC 5867 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||||||| ||||| ||||| ||||| || || Sbjct 5866 GAACTTGGAGCTCAAACGCAATTTGACCATAA 5835 Score = 138 bits (152), Expect = 8e-28 Identities = 205/288 (71%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || || |||||||| | | ||||||||||||||| | || || Sbjct 5753 AACGAACGCTTCATTGTGAATGGATCGCACGATGCGGCCAAGCTGCAGGACCTGCTCGAT 5694 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| || || | || |||||||| | ||| || || ||||||||||| || || || Sbjct 5693 GGCTTCATCCGTAGGTACGTGCTGTGCCCGGAGTGTGACAACCCGGAGACGGATCTGATC 5634 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 ||||| |||||| || ||||| ||||| ||||| |||||||| | |||||| | Sbjct 5633 GTGTCGTCCAAGAAGGGTACTATCTCGCAGGGTTGCAAGGCGTGCGGATTCCATGGTCCG 5574 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC--ACCTAAAGAC- 6611 || || | || || | ||||| ||||| | || ||||| || || | || | Sbjct 5573 CTCGAGGTGAACCATAAGGTGAACACGTTCATCATCAAAAATCCACCCAACGTGAACCCG 5514 Query 6612 CCTAGCACGCAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659 ||||| |||||| | || | | || |||| ||| |||||||| Sbjct 5513 GCTAGC---CAGGGTGCGTCCCTGACCGAGGGCAAGCGTAGCAAGCGC 5469 >seq24704 Length=53625 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||| | ||||| |||||| || ||| || || || ||||| || || Sbjct 37704 ACCACCGCGCAGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGA 37645 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || | || || ||||| || || || || || ||||| | || Sbjct 37644 CAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGG 37585 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||||| || ||||| || || Sbjct 37584 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 37525 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 37524 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 37474 >seq9735 Length=15595 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||| |||| |||||| || ||||| ||||||||||| || || Sbjct 4837 ACCACCACGAAGTCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 4778 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || | || || | || || |||||||| || || || || ||||| | || Sbjct 4777 GAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGG 4718 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||| || ||| || || ||||||||||| || || || | || || Sbjct 4717 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 4658 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | ||| || || || || || | ||||||||||| |||||||||||| Sbjct 4657 CTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGTTT 4606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334823228609639