Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq22281 170 2e-37 seq2544 116 4e-21 seq2539 116 4e-21 seq23174 111 2e-19 >seq22281 Length=11977 Score = 170 bits (188), Expect = 2e-37 Identities = 300/437 (69%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 || |||| || || | |||||| ||||| || |||||||| ||||||| ||| || || Sbjct 2876 CAGCTCGAGCAGCAAACGATCAGCCACAAACTCGATGTACTGCGACATCAGATCGCAGTT 2935 Query 92968 CATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC 93027 ||| || || | || || || || | |||||||| || | |||||| ||||| || Sbjct 2936 CATGCCAAGCATGTCAACGGGCAGTGCCTTCGTCAAGAACTCCTGCTCGATCACAACCGC 2995 Query 93028 TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACAT 93087 || | || || | || | || | || || || || | ||| ||| |||| Sbjct 2996 ATCGCGAATAATGTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACAT 3055 Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 | ||| || |||||| || | |||||||| || || |||| ||| || ||| || Sbjct 3056 CAGGCAGGCGAAGTCGCAGTGCAGCCCTTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGT 3115 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | ||| || || ||||||||||| || || ||||| || || || || Sbjct 3116 GAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAA 3175 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 || |||||||| ||||| || || ||||| | ||| || | || || || || || Sbjct 3176 GAAGATACCTTCGACGGCGGCGAAAGCCACGACACGCTCACCGAAGTTAGCCTTCTTGCT 3235 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | |||||| |||| ||||| || || || ||||| | || || || |||||||| || Sbjct 3236 GGAGATCCAGTTTAGCGCCCAGTCAGCCTTCTTCTTCACGCACGGCAGCGTTTCGATGGC 3295 Query 93328 GTTAAATAGGTAATCTC 93344 ||||| ||| | |||| Sbjct 3296 ATTAAACAGGAATTCTC 3312 Score = 104 bits (114), Expect = 3e-17 Identities = 190/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 93352 CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCAT 93411 ||| || || ||||| || ||||| | ||| || ||||| || || || || ||||| Sbjct 3406 CGAGTCACGGATGTAAGTGTCGATCAGCAGTGAGTACATCTCGCTGTGCACGTTTTCCAT 3465 Query 93412 TGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCT 93471 ||||| ||||| ||||||||||| | |||||||| | ||| || || || ||| | Sbjct 3466 CGCAATCTGGAACCCGTAGAAACAGCGTGCTTCCGTTACCTGTACCTCCTGGCTAAAGCG 3525 Query 93472 CTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT 93531 || || ||||| || || || || |||||||| || ||||| || || | | || Sbjct 3526 TTCCACCAGATTCTCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCAAGCACGTGGGA 3585 Query 93532 TATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 || || || ||| | || ||| ||| |||||| || | ||| || || ||| Sbjct 3586 AATGAAGTGACGTTCGC-TC-GGTTTCAGCGCATCCCAGTCCTTCATATCCTTGGACAGA 3643 Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || || || ||||| ||||| || || || Sbjct 3644 TCAACCTCCTCCACCGTCCAGAACGAAGCCTCCGC 3678 >seq2544 Length=4212 Score = 116 bits (128), Expect = 4e-21 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 3502 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 3443 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||| ||||||||| Sbjct 3442 GTGGGTTCGAACCCCACTTCTGACAAAT 3415 >seq2539 Length=4254 Score = 116 bits (128), Expect = 4e-21 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 291 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 232 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||| ||||||||| Sbjct 231 GTGGGTTCGAACCCCACTTCTGACAAAT 204 >seq23174 Length=11836 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 8103 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 8044 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 8043 GTGGGTTCGAACCCCACTTCTGACA 8019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556649408679560