Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq22281 170 2e-37
seq2544 116 4e-21
seq2539 116 4e-21
seq23174 111 2e-19
>seq22281
Length=11977
Score = 170 bits (188), Expect = 2e-37
Identities = 300/437 (69%), Gaps = 0/437 (0%)
Strand=Plus/Plus
Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967
|| |||| || || | |||||| ||||| || |||||||| ||||||| ||| || ||
Sbjct 2876 CAGCTCGAGCAGCAAACGATCAGCCACAAACTCGATGTACTGCGACATCAGATCGCAGTT 2935
Query 92968 CATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC 93027
||| || || | || || || || | |||||||| || | |||||| ||||| ||
Sbjct 2936 CATGCCAAGCATGTCAACGGGCAGTGCCTTCGTCAAGAACTCCTGCTCGATCACAACCGC 2995
Query 93028 TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACAT 93087
|| | || || | || | || | || || || || | ||| ||| ||||
Sbjct 2996 ATCGCGAATAATGTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACAT 3055
Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147
| ||| || |||||| || | |||||||| || || |||| ||| || ||| ||
Sbjct 3056 CAGGCAGGCGAAGTCGCAGTGCAGCCCTTCGTCGCGCGAAATCAGCTCGTTCGAGAAGGT 3115
Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207
| || || | ||| || || ||||||||||| || || ||||| || || || ||
Sbjct 3116 GAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGAAGCGAAGCTGCCGCTGAA 3175
Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267
|| |||||||| ||||| || || ||||| | ||| || | || || || || ||
Sbjct 3176 GAAGATACCTTCGACGGCGGCGAAAGCCACGACACGCTCACCGAAGTTAGCCTTCTTGCT 3235
Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327
| |||||| |||| ||||| || || || ||||| | || || || |||||||| ||
Sbjct 3236 GGAGATCCAGTTTAGCGCCCAGTCAGCCTTCTTCTTCACGCACGGCAGCGTTTCGATGGC 3295
Query 93328 GTTAAATAGGTAATCTC 93344
||||| ||| | ||||
Sbjct 3296 ATTAAACAGGAATTCTC 3312
Score = 104 bits (114), Expect = 3e-17
Identities = 190/275 (69%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 93352 CGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCAT 93411
||| || || ||||| || ||||| | ||| || ||||| || || || || |||||
Sbjct 3406 CGAGTCACGGATGTAAGTGTCGATCAGCAGTGAGTACATCTCGCTGTGCACGTTTTCCAT 3465
Query 93412 TGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCT 93471
||||| ||||| ||||||||||| | |||||||| | ||| || || || ||| |
Sbjct 3466 CGCAATCTGGAACCCGTAGAAACAGCGTGCTTCCGTTACCTGTACCTCCTGGCTAAAGCG 3525
Query 93472 CTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTT 93531
|| || ||||| || || || || |||||||| || ||||| || || | | ||
Sbjct 3526 TTCCACCAGATTCTCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCAAGCACGTGGGA 3585
Query 93532 TATAAAATG--TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589
|| || || ||| | || ||| ||| |||||| || | ||| || || |||
Sbjct 3586 AATGAAGTGACGTTCGC-TC-GGTTTCAGCGCATCCCAGTCCTTCATATCCTTGGACAGA 3643
Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| || || || || ||||| ||||| || || ||
Sbjct 3644 TCAACCTCCTCCACCGTCCAGAACGAAGCCTCCGC 3678
>seq2544
Length=4212
Score = 116 bits (128), Expect = 4e-21
Identities = 79/88 (90%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 3502 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 3443
Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350
||||||||||||||||| |||||||||
Sbjct 3442 GTGGGTTCGAACCCCACTTCTGACAAAT 3415
>seq2539
Length=4254
Score = 116 bits (128), Expect = 4e-21
Identities = 79/88 (90%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 291 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 232
Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350
||||||||||||||||| |||||||||
Sbjct 231 GTGGGTTCGAACCCCACTTCTGACAAAT 204
>seq23174
Length=11836
Score = 111 bits (122), Expect = 2e-19
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 8103 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 8044
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||| ||||||
Sbjct 8043 GTGGGTTCGAACCCCACTTCTGACA 8019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556649408679560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |